Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_P20
(482 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal pro... 93 1e-19
AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical ... 29 2.3
Z81506-10|CAB04123.2| 270|Caenorhabditis elegans Hypothetical p... 28 4.1
AL023836-2|CAC42371.1| 270|Caenorhabditis elegans Hypothetical ... 28 4.1
Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z70757-2|CAA94798.1| 611|Caenorhabditis elegans Hypothetical pr... 27 9.4
DQ178244-1|ABA18183.1| 521|Caenorhabditis elegans putative sulf... 27 9.4
AY954525-1|AAX34433.1| 611|Caenorhabditis elegans anion transpo... 27 9.4
AY887917-1|AAX34429.1| 611|Caenorhabditis elegans anion transpo... 27 9.4
>AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 22 protein.
Length = 130
Score = 92.7 bits (220), Expect = 1e-19
Identities = 43/46 (93%), Positives = 44/46 (95%)
Frame = +1
Query: 157 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPR 294
VIV+FLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNK VISPR
Sbjct: 33 VIVRFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKASVISPR 78
Score = 74.9 bits (176), Expect = 3e-14
Identities = 37/55 (67%), Positives = 45/55 (81%), Gaps = 1/55 (1%)
Frame = +2
Query: 272 SVVSFHLXFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEXXXKHLGGKI 433
SV+S L ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEE KHLGGKI
Sbjct: 73 SVISPRL--NIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKI 125
Score = 54.0 bits (124), Expect = 5e-08
Identities = 25/29 (86%), Positives = 28/29 (96%)
Frame = +3
Query: 60 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 146
MVRMNVL+DAL +I+NAEKRGKRQVLIRP
Sbjct: 1 MVRMNVLADALNAINNAEKRGKRQVLIRP 29
>AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical
protein C46E10.3 protein.
Length = 392
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 302 HQXRGEMTPHLFSLPVRFTTILPAL*SSTISNSPM 198
H +G+ + LP RF+T+L AL T+ NS M
Sbjct: 318 HPSKGDCPQDSYDLP-RFSTVLKALYGCTVGNSDM 351
>Z81506-10|CAB04123.2| 270|Caenorhabditis elegans Hypothetical
protein F16H6.10 protein.
Length = 270
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 333 LVHLSISLMGTSKXR*NDTTLV*SACEIYNNLASSVIINDFKLS 202
L HLSI++ S D T + I + SS+I+NDF L+
Sbjct: 88 LSHLSITISEESSLNKTDVTFLKHLKRILDLRPSSLIVNDFTLT 131
>AL023836-2|CAC42371.1| 270|Caenorhabditis elegans Hypothetical
protein F16H6.10 protein.
Length = 270
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 333 LVHLSISLMGTSKXR*NDTTLV*SACEIYNNLASSVIINDFKLS 202
L HLSI++ S D T + I + SS+I+NDF L+
Sbjct: 88 LSHLSITISEESSLNKTDVTFLKHLKRILDLRPSSLIVNDFTLT 131
>Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical
protein F17B5.6 protein.
Length = 363
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Frame = +1
Query: 346 TTVWL-PSPYNKWW 384
T +WL P PYN WW
Sbjct: 29 TVIWLIPRPYNYWW 42
>Z70757-2|CAA94798.1| 611|Caenorhabditis elegans Hypothetical
protein ZK287.2 protein.
Length = 611
Score = 26.6 bits (56), Expect = 9.4
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 135 GLVFSLAFQHYV*ILRRHSIRSYAPWLRFSFALRSEPN*QNGPKS 1
GLV SLAF Y +LR+ W FS L E QN P++
Sbjct: 456 GLVISLAFSLYTLVLRQQ-------WPSFSTVLHDETPRQNVPEN 493
>DQ178244-1|ABA18183.1| 521|Caenorhabditis elegans putative sulfate
transporter prestinprotein.
Length = 521
Score = 26.6 bits (56), Expect = 9.4
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 135 GLVFSLAFQHYV*ILRRHSIRSYAPWLRFSFALRSEPN*QNGPKS 1
GLV SLAF Y +LR+ W FS L E QN P++
Sbjct: 366 GLVISLAFSLYTLVLRQQ-------WPSFSTVLHDETPRQNVPEN 403
>AY954525-1|AAX34433.1| 611|Caenorhabditis elegans anion
transporter SULP-8a protein.
Length = 611
Score = 26.6 bits (56), Expect = 9.4
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 135 GLVFSLAFQHYV*ILRRHSIRSYAPWLRFSFALRSEPN*QNGPKS 1
GLV SLAF Y +LR+ W FS L E QN P++
Sbjct: 456 GLVISLAFSLYTLVLRQQ-------WPSFSTVLHDETPRQNVPEN 493
>AY887917-1|AAX34429.1| 611|Caenorhabditis elegans anion
transporter SULP-8b protein.
Length = 611
Score = 26.6 bits (56), Expect = 9.4
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 135 GLVFSLAFQHYV*ILRRHSIRSYAPWLRFSFALRSEPN*QNGPKS 1
GLV SLAF Y +LR+ W FS L E QN P++
Sbjct: 456 GLVISLAFSLYTLVLRQQ-------WPSFSTVLHDETPRQNVPEN 493
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,403,849
Number of Sequences: 27780
Number of extensions: 162312
Number of successful extensions: 273
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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