Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P17
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3761| Best HMM Match : Tom22 (HMM E-Value=0.14)                     75   3e-14
SB_2924| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.2  
SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)               29   2.8  
SB_18338| Best HMM Match : MFS_1 (HMM E-Value=0.038)                   29   2.8  
SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)                 29   2.8  
SB_3388| Best HMM Match : Involucrin (HMM E-Value=4.9)                 28   6.6  
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)                   28   6.6  
SB_2192| Best HMM Match : rve (HMM E-Value=4e-23)                      28   6.6  
SB_1771| Best HMM Match : Fz (HMM E-Value=0.00021)                     28   6.6  

>SB_3761| Best HMM Match : Tom22 (HMM E-Value=0.14)
          Length = 109

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 36/85 (42%), Positives = 51/85 (60%)
 Frame = +2

Query: 254 DEPXETLSERLWGLTEMFPXCVRNGTYTVTTNTWSGIKGLYGLSRSVMWVVASSSVILFA 433
           D+  ET+ ER+  L+EMFP  VRN        T SG K LY  +   +W++++S +IL  
Sbjct: 3   DDISETIGERIMALSEMFPDSVRNVASATGGYTVSGAKWLYNFTGKTIWILSTSFMILAL 62

Query: 434 PVIFXVXRAQVAEMEKSQQKQVLLG 508
           PV+F V R Q  E +  QQ+Q+LLG
Sbjct: 63  PVVFEVERVQTEEAQLQQQRQILLG 87


>SB_2924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = -2

Query: 360 PDHVFVVTVYVPFLTHXGNISVRPHN 283
           P H  ++ +++PF++   +++ RPH+
Sbjct: 40  PHHFVIIIIFIPFISSSSSLTYRPHH 65


>SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)
          Length = 242

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 381 RPYRPLIPDHVFVVTVYVPFLTHXGNISVRPH 286
           RP+RP+ P  +   T   P  +H G IS+RPH
Sbjct: 21  RPHRPIAPSPLGPTTPSPP--SHHGPISLRPH 50


>SB_18338| Best HMM Match : MFS_1 (HMM E-Value=0.038)
          Length = 451

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 332 YTVTTNTWS--GIKGLYGLSRSVMWVVASSSVILFAPV 439
           Y+   N W    ++ L+G S S++WVV SS   + AP+
Sbjct: 293 YSYLINPWYVLPVQILHGFSFSLVWVVCSSYAAVMAPI 330


>SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)
          Length = 2253

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 460  SSSRNGKVTTKTGVIRDKHSYGRTHACDATNATINY 567
            S+S   KV T+ G+I+   +  R +AC ATN   +Y
Sbjct: 1996 STSNYVKVVTQFGIIKGLIAPTRLNACTATNVAFDY 2031


>SB_3388| Best HMM Match : Involucrin (HMM E-Value=4.9)
          Length = 174

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 460 SSSRNGKVTTKTGVIRDKHSYGRTHACDATNATINY 567
           S+S   KV T+ G+I+   +  R ++C ATN   +Y
Sbjct: 124 STSNYVKVVTQFGIIKGLIAPTRLNSCTATNVAFDY 159


>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
          Length = 1068

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 460 SSSRNGKVTTKTGVIRDKHSYGRTHACDATNATINY 567
           S+S   KV T+ G+I+   +  R ++C ATN   +Y
Sbjct: 622 STSNYVKVVTQFGIIKGLIAPTRLNSCTATNVAFDY 657


>SB_2192| Best HMM Match : rve (HMM E-Value=4e-23)
          Length = 491

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 460 SSSRNGKVTTKTGVIRDKHSYGRTHACDATNATINY 567
           S+S   KV T+ G+I+   +  R ++C ATN   +Y
Sbjct: 441 STSNYVKVVTQFGIIKGLIAPTRLNSCTATNVAFDY 476


>SB_1771| Best HMM Match : Fz (HMM E-Value=0.00021)
          Length = 163

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 340 YNKYMVWYQRPVWSITLSNVGCCQFIGNIVCSCHI 444
           YN++     R + +IT   VGC  +  +++CS ++
Sbjct: 56  YNEHYSMASRAIDAITKQLVGCSTYANDLICSVYL 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,502,159
Number of Sequences: 59808
Number of extensions: 344317
Number of successful extensions: 688
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)