Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P17
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025470-5|AAB71053.1|  109|Caenorhabditis elegans Hypothetical ...    75   4e-14
U58757-3|AAC47921.3|  620|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z83111-1|CAB05532.1|  331|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of p...    27   10.0 
U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of p...    27   10.0 
AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math ...    27   10.0 

>AF025470-5|AAB71053.1|  109|Caenorhabditis elegans Hypothetical
           protein W10D9.5 protein.
          Length = 109

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 36/87 (41%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
 Frame = +2

Query: 251 DDEPXETLSERLWGLTEMFPXCVRNGTY-TVTTNTWSGIKGLYGLSRSVMWVVASSSVIL 427
           D E  ET+ ER+ GL EMFP  +R+  + TV  + W G+KG++ L++S +WVV+++S+I 
Sbjct: 13  DSEIHETIVERIEGLGEMFPDALRSAVHSTVDWSIW-GVKGVFSLTKSTIWVVSTTSLIA 71

Query: 428 FAPVIFXVXRAQVAEMEKSQQKQVLLG 508
           F P I    R+ + + + +QQ+Q+LLG
Sbjct: 72  FLPYIIEKERSDLEKTQVAQQRQMLLG 98


>U58757-3|AAC47921.3|  620|Caenorhabditis elegans Hypothetical
           protein C01B10.10 protein.
          Length = 620

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 284 LWGLTEMFPXCVRNGTYTVTTNTW 355
           +W  TE  P C+ N T+T +   W
Sbjct: 69  VWNATEYGPACMSNSTWTQSPQKW 92


>Z83111-1|CAB05532.1|  331|Caenorhabditis elegans Hypothetical
           protein F57G8.1 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 518 LCLSLITPVFVVTFP 474
           LCL +  PVFV+TFP
Sbjct: 243 LCLQVFIPVFVLTFP 257


>U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform b protein.
          Length = 623

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 505 RDKHSYGRTHACDATNATIN 564
           RDKH YG +H C   N + N
Sbjct: 548 RDKHFYGGSHTCPECNYSSN 567


>U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform a protein.
          Length = 684

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 505 RDKHSYGRTHACDATNATIN 564
           RDKH YG +H C   N + N
Sbjct: 609 RDKHFYGGSHTCPECNYSSN 628


>AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math
           domain containingprotein 47 protein.
          Length = 683

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 228 GDPAVGDDPTEGVMKYCSGLLCRGII 151
           GDP++ DD   G++K        GI+
Sbjct: 614 GDPSINDDTVHGILKIAQSYEAAGIV 639


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,914,840
Number of Sequences: 27780
Number of extensions: 253095
Number of successful extensions: 557
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)