Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P10
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.4  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   7.2  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   9.5  

>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +1

Query: 217 KKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSF 369
           + +    T    L W  +   PT      PF   P+TS  L  +    SSF
Sbjct: 244 RARQTTRTRSNTLPWSPRVFGPTLGYNTPPFGYPPTTSSALPNASGSSSSF 294


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 518  ETVHRLINQLMAHNVPALVHYSLLNRFV*SVSECSMIRRWLYVL 649
            E+VH   N+ +AHNV    +  + N  +  V E   +R + Y +
Sbjct: 1834 ESVHAFNNRFVAHNVQVKWNNFIRNAVMSYVHEVERVRGFAYYM 1877


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 7/31 (22%), Positives = 19/31 (61%)
 Frame = +3

Query: 288  EKKMFTICSKSKHKSWVKNIRIETIFIWRIR 380
            +KK+ T+  + K + W+ + R   I+++ ++
Sbjct: 1546 QKKLVTLAEQDKKRVWICSFRTNEIYLYGLK 1576


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 262 ESKAQL--PTKRRRCSPFAASPSTSP 333
           E K++L  PT  R  +PF  SPS++P
Sbjct: 47  EGKSELVSPTLERLVAPFNCSPSSTP 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,194
Number of Sequences: 5004
Number of extensions: 54454
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)