Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P10
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)               61   9e-10
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)                  29   3.3  
SB_25483| Best HMM Match : zf-B_box (HMM E-Value=0.21)                 29   4.3  
SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  

>SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1125

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 4/150 (2%)
 Frame = +1

Query: 214 RKKKMACATLKRNLDWE---SKAQLPT-KRRRCSPFAASPSTSPGLKTSESKPSSFGESV 381
           R  KMACATLKR+ +++   S    P+ KRRRC P A S S S    +S +  S F E  
Sbjct: 151 RFSKMACATLKRSYEFDPLLSPQHQPSPKRRRCIPMATSSSPS----SSSNTDSPFLEIT 206

Query: 382 SAPVKITPERMAQEIYDXIKRLHRRGQLRLANXXXXXXXXXXXXXXXXXPPHQSAHGPQR 561
               + + E+++  ++   KRL RR  L+  +                 P  +       
Sbjct: 207 P---RYSQEQLSTNLHMEWKRLQRRKHLKAPSSNSVESMNTYTCSPSSSPTRKE------ 257

Query: 562 ARTRALFTFKQVRMICERMLHDQEVALRAE 651
              + LFT KQV ++CERML +++  LR E
Sbjct: 258 ---QPLFTLKQVSLLCERMLKERDTQLREE 284


>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
          Length = 1600

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/83 (24%), Positives = 35/83 (42%)
 Frame = +1

Query: 172  QIR*HIRKPXDFVGRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSE 351
            Q R    KP D   RK K++C T K       K +   +  +    A+S +     ++S+
Sbjct: 979  QARPRPSKPQDQASRKTKVSCMTKKDQYQASRKTKQVARPSKPQDQASSKTQD---QSSD 1035

Query: 352  SKPSSFGESVSAPVKITPERMAQ 420
             +   +   +  P+KI P  + Q
Sbjct: 1036 GREGGYSRYLMLPLKIIPAVIIQ 1058


>SB_25483| Best HMM Match : zf-B_box (HMM E-Value=0.21)
          Length = 258

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +1

Query: 211 GRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAP 390
           G++KK     LK   D   + ++ +KR+R  P     ST P      +K +  G+  S  
Sbjct: 7   GKRKKSVEELLKEGRDLLDRQEVKSKRKR-KPVRFLFSTDPATGLRNNKGTYKGQKKSKE 65

Query: 391 VKITPE 408
            ++ PE
Sbjct: 66  KRLNPE 71


>SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 340 KTSESKPSSFGESVSAPVKITPERMAQEIYDXIKR 444
           +T ESK S    S+S PVK+  E+    +Y+ +K+
Sbjct: 335 ETKESKISRSPISISVPVKVGDEKTKGYVYNVLKK 369


>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 356 NHLHLENPLVH-L*KLPQNAWHKRFMMXLNDCIDVDSCAWPTALLHHAHHQV 508
           NH H+    ++ L  LP N +H R        +D+   A P+   HH HH +
Sbjct: 557 NHQHIAVVTINSLPLLPSNYYHHRHEHVSMIAVDILPSA-PSTYYHHHHHDI 607


>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1511

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = -2

Query: 383 LTDSPNEDGFDSDVFNP----GLVLGLAANGEHLLLFVGNCALDSQSRFLFNVAHAIFFL 216
           + +S + DG+DSD F+        LG   N +  L  V     D++S+ L+N+AH I   
Sbjct: 498 VANSDDSDGWDSDEFDDEDDDNATLGEDRNKKQELDLVFP---DARSKKLYNIAHEILTT 554

Query: 215 RPTKSXGLRICQRICF 168
                  LR+  ++ F
Sbjct: 555 ERAYVKRLRLLDKVFF 570


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,163,545
Number of Sequences: 59808
Number of extensions: 407619
Number of successful extensions: 1174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)