Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P09
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      223   1e-58
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)                30   1.4  
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)                29   4.4  
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   7.6  
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  223 bits (544), Expect = 1e-58
 Identities = 108/176 (61%), Positives = 132/176 (75%)
 Frame = +3

Query: 126 EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKE 305
           +D  K+P VPE++LK             +  L ++     K++EIFKRAE+YVKEYR KE
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 306 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFXLRQINNGVFVRL 485
            DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSPKVRK+LQL  LRQINNGVFVRL
Sbjct: 63  VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRL 122

Query: 486 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVXKRLHK 653
           NKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K+  QR+ +T NSIV K L K
Sbjct: 123 NKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGK 178


>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
          Length = 546

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 325 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSV 429
           P +HA    T  P + N H +S S  +T   RRSV
Sbjct: 318 PFRHATTTITVLPSRYNNHTASSSHATTTIQRRSV 352


>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
          Length = 482

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +3

Query: 111 PVKGKEDSKKLP--AVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYV 284
           P K KE SK +   AV +S+LK             + T  ++  AI KKR  +    +Y+
Sbjct: 305 PAK-KESSKHIEKNAVKKSILKAPKRNAKKAATDAEQTTTKK--AIDKKRRRYNSRRRYI 361

Query: 285 KEYRIKERDEIRLARQARNR 344
           +  R   R      R  R R
Sbjct: 362 RRRRFTSRRRATRRRYTRRR 381


>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 228 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 353
           R  AI ++RE+++R E Y +    + R+  R     R R  Y
Sbjct: 16  RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57


>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 228 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 353
           R   + ++REI++R E Y +    + R+  RL    R R  Y
Sbjct: 27  RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 300 KERDEIRLARQARNRGNYYVP 362
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1981

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 318  RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRK 431
            RL R  + R NYY+  +  +AF + I  + +  P  R+
Sbjct: 1886 RLRRTEKRRQNYYIATQKLMAFALNIYEVLKDDPLTRR 1923


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,055,960
Number of Sequences: 59808
Number of extensions: 378235
Number of successful extensions: 867
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)