Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P08
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0946 - 29579779-29580004,29580098-29580210                       31   0.68 
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495     31   0.89 
08_02_0772 + 21035762-21037567                                         29   3.6  
07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371     27   8.3  
02_03_0052 - 14456925-14457176,14457277-14457437,14457843-144579...    27   8.3  

>04_04_0946 - 29579779-29580004,29580098-29580210
          Length = 112

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = -3

Query: 447 CGLARYSXIYLPTVYSTFRGDQCTSPGISTRSGAHRQKQRLAAAGSITLGWSSCHHHRCC 268
           CG +    I++    + F  ++C    I      HR+K+R AAA ++++     +HH   
Sbjct: 26  CGKSLSGDIFMYRGDTPFCSEECRQQQIEVDRAKHRRKKR-AAAHAVSVRKEHRNHHH-- 82

Query: 267 LHTLPHHGALSPR 229
            H   HH    PR
Sbjct: 83  -HHRHHHQQPQPR 94


>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
          Length = 1086

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = -3

Query: 291 SCHHHRCCLHTL-----PHHGALSPRTLHSYTFRDISNLFNKNFTYSL 163
           SC HHR C+  L     P  G LSP+ L + +F  I NL N   T SL
Sbjct: 72  SCSHHRQCVTALDLRDTPLLGELSPQ-LGNLSFLSILNLTNTGLTGSL 118


>08_02_0772 + 21035762-21037567
          Length = 601

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = -3

Query: 324 AAAGSITLGWSSCHHHRCCLHTLPHHGALSPRTLHSYTFR 205
           AA+  ++L  +S   HR  L  L HH AL+P TL S TFR
Sbjct: 62  AASAFLSLAAASLPSHRA-LPVLLHHLALAPETLPS-TFR 99


>07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371
          Length = 185

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 285 HHHRCCLHTLPHHGA 241
           HH  C LHT+ HH A
Sbjct: 170 HHFSCLLHTMQHHEA 184


>02_03_0052 -
           14456925-14457176,14457277-14457437,14457843-14457914,
           14458105-14458221,14458310-14458322,14458917-14458946,
           14459837-14460010,14460276-14460417,14460731-14460792,
           14461047-14461643
          Length = 539

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 280 PPVLPSHAASPWRSVSS 230
           PP LPSHAA P R  S+
Sbjct: 151 PPPLPSHAAGPCRKTST 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,353,048
Number of Sequences: 37544
Number of extensions: 240241
Number of successful extensions: 682
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)