Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P08
         (584 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-682|AAF45987.2| 1893|Drosophila melanogaster CG2861-PA,...    29   4.6  
BT011361-1|AAR96153.1|  484|Drosophila melanogaster RE66690p pro...    28   8.1  

>AE014298-682|AAF45987.2| 1893|Drosophila melanogaster CG2861-PA,
            isoform A protein.
          Length = 1893

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 304  TRMEFVSPPPVLPSHAASPWRSVSSDIALIHV 209
            TR+E  SPPP +P  A   +    +D+ L+ V
Sbjct: 989  TRLESPSPPPPVPMQACGTFEEHLTDLTLVRV 1020


>BT011361-1|AAR96153.1|  484|Drosophila melanogaster RE66690p
           protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
 Frame = -3

Query: 369 GISTRSGAHRQKQRLAAAGSITLGWSSC----HHHRC-CLHTLPHH 247
           G    SG  R+KQ  A    +  G   C    HHH C C H   HH
Sbjct: 38  GAQEESGRCRRKQNNATQTKLEGGSCCCVITTHHHHCHCNHHRHHH 83


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,669,977
Number of Sequences: 53049
Number of extensions: 411549
Number of successful extensions: 1025
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2338128087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)