Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P07
         (437 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   0.73 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   0.73 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   6.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   9.0  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 0.73
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 128  LSFCFVV*ILTLTLVENLLH-SFAFDEEFYIYYLHD 232
            L+  +V+ I  LTL ++LLH  + FD +    Y  D
Sbjct: 1232 LNSLYVIVIFLLTLKKDLLHLDWPFDPKVNFTYFED 1267


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 0.73
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 128  LSFCFVV*ILTLTLVENLLH-SFAFDEEFYIYYLHD 232
            L+  +V+ I  LTL ++LLH  + FD +    Y  D
Sbjct: 1232 LNSLYVIVIFLLTLKKDLLHLDWPFDPKVNFTYFED 1267


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 296 SPRESRTFTHRSSKTFKNC 240
           SPR  R +T R++    NC
Sbjct: 278 SPRSQRRYTGRATCDCPNC 296


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 216 SITYTILKTIFKSFATSVSERSALPG 293
           S+   I K I KSF +   + S+ PG
Sbjct: 727 SVLNAIEKLIEKSFDSRSRQNSSFPG 752


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,475
Number of Sequences: 336
Number of extensions: 1362
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)