Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P07
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    27   1.3  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.1  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   6.7  
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    25   6.7  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    24   8.9  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    24   8.9  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    24   8.9  

>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 363 QKKKHLDKNFIKIXKHDLNCALIT 292
           QK+K    NF+   K D+NC ++T
Sbjct: 223 QKRKEEVSNFLHSIKEDINCRVVT 246


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 91  CYFNETI*QLCIIIVLFCCL 150
           C+FN TI  L  IIV+F  L
Sbjct: 401 CFFNSTIATLITIIVIFILL 420


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 228 TILKTIFKSFATSVSERSALPG*LRHNSNRV 320
           +IL   FK    S+SE    P  + HNS+R+
Sbjct: 117 SILLPYFKKKELSISEHKINPNNVIHNSSRI 147


>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 126 NYRFVL--LFEY*H*LWSKIYCIHLHLMKNFISITYTILKTIFKSF 257
           N+R V+  +F     +++ IYC H H+M      +Y  L T FK F
Sbjct: 141 NFRKVIQQIFRRLFRIYAHIYCSHFHVMVAMELESY--LNTSFKHF 184


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 152 ILTLTLVENLLHSFAFDEEFY 214
           IL  T+ EN+L     D EFY
Sbjct: 655 ILNATIQENILFGLELDPEFY 675


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 140 FVV*ILTLTLVENLLHSFAFDEEFY 214
           F++ + T TLVE  +H F F  + Y
Sbjct: 189 FIIGLFTWTLVEYTMHRFLFHLDEY 213


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 363 QKKKHLDKNFIKIXKHDLNCALITPGEQNVHS 268
           +K+KH+ K+  K  KH+L    +  GE NV S
Sbjct: 195 KKRKHVSKSNSKHAKHELRTNRMLDGE-NVKS 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,283
Number of Sequences: 5004
Number of extensions: 21746
Number of successful extensions: 50
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)