Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P04
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.9  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   9.0  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    25   9.0  
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    25   9.0  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    25   9.0  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   9.0  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    25   9.0  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 381  DSRQHQLHQRHSRCQQMNFP*SSLTLRKLPSLLPFPCDPLLYSSL 247
            DS +  LH+R +   + N P         P  LP P  PLL+S+L
Sbjct: 1033 DSDKSSLHKRSAELSRNNSP--------RPDFLPLPNQPLLHSNL 1069


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 365 WCWRESRTNEXPXSEAT 415
           W W ESR  E P S+ T
Sbjct: 402 WVWAESRCTEIPESKRT 418


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 448 LPIPGLKIIPSICTILWISV 507
           L I G+ I+ ++C++ WIS+
Sbjct: 200 LMIKGISIVIALCSVYWISL 219


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 557 EQTAQSTELLFVVLHGPTEIHKIVQIDGIILSPGIGKR 444
           E+   STE L ++L+    I KI+++ G  + P + K+
Sbjct: 224 EEEDLSTEFLTIMLNSSKNIVKIIKLGGTHIQPLLLKK 261


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 448 LPIPGLKIIPSICTILWISV 507
           L I G+ I+ ++C++ WIS+
Sbjct: 200 LMIKGISIVIALCSVYWISL 219


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 448 LPIPGLKIIPSICTILWISV 507
           L I G+ I+ ++C++ WIS+
Sbjct: 172 LMIKGISIVIALCSVYWISL 191


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 448 LPIPGLKIIPSICTILWISV 507
           L I G+ I+ ++C++ WIS+
Sbjct: 200 LMIKGISIVIALCSVYWISL 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,348
Number of Sequences: 5004
Number of extensions: 39690
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)