Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P04
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0649 - 5497844-5499727                                           28   7.0  
07_02_0019 + 11877119-11879984,11880316-11880389,11881293-118815...    28   7.0  

>12_01_0649 - 5497844-5499727
          Length = 627

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/64 (31%), Positives = 35/64 (54%)
 Frame = +3

Query: 432 MQKLTFAYSRAQDYPVDLYYLMDLSRSMKNDKEKLSALGSLLSATMRNMTSNFXIGFGSF 611
           M +L  A  + +D  +D +    L R   ND++++S LGS  S  M+ + ++F    GS 
Sbjct: 69  MWRLRDAIEKLED-AIDEHEYYKL-REKANDQQEVSELGSCFS-KMKQVVTSFLTHSGSS 125

Query: 612 VDKL 623
           ++KL
Sbjct: 126 LEKL 129


>07_02_0019 +
           11877119-11879984,11880316-11880389,11881293-11881511,
           11881557-11881679,11881759-11881859,11881938-11881990,
           11882084-11882269,11882677-11882894
          Length = 1279

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = -2

Query: 265 FAXLKSLLYAGSTNS*LSGLKM*ASSQPPVPPSIAGLKHSRSIEVGGEAPRTAVLNVFVN 86
           FA L   L AGS  +  +GL +      P PP +    H    + G  +P  AVL+V V+
Sbjct: 125 FAHLAMSLCAGSLFNLANGLLIKMIRAYPSPPVVLASIHRALSDSGHRSP--AVLDVLVD 182

Query: 85  TVGK 74
           T  K
Sbjct: 183 TYKK 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,963,624
Number of Sequences: 37544
Number of extensions: 286162
Number of successful extensions: 888
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)