Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P04
         (626 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...   103   6e-24
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    82   1e-17
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    23   6.0  

>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score =  103 bits (246), Expect = 6e-24
 Identities = 46/83 (55%), Positives = 66/83 (79%)
 Frame = +3

Query: 378 NLVQMXPQXVKLXMRMNQMQKLTFAYSRAQDYPVDLYYLMDLSRSMKNDKEKLSALGSLL 557
           ++VQ+ PQ V L +R+N+  +    Y++A+DYPVDLYYLMDLS+SM++DK  LS LG+ L
Sbjct: 140 SIVQISPQRVSLKLRLNEAFRFNVNYAQAEDYPVDLYYLMDLSKSMEDDKTILSTLGADL 199

Query: 558 SATMRNMTSNFXIGFGSFVDKLV 626
           ++ MR +TSNF +GFGSFVDK++
Sbjct: 200 ASEMRKITSNFKLGFGSFVDKVL 222


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 82.2 bits (194), Expect = 1e-17
 Identities = 35/79 (44%), Positives = 56/79 (70%)
 Frame = +3

Query: 384 VQMXPQXVKLXMRMNQMQKLTFAYSRAQDYPVDLYYLMDLSRSMKNDKEKLSALGSLLSA 563
           VQ+ PQ + L +     + ++F Y  A++YP+D+YYLMDL+ SM++DK  L ++GS L+ 
Sbjct: 108 VQIMPQKMNLRLGKLGSRTISFKYKPAKNYPLDMYYLMDLTWSMRDDKATLESMGSQLAL 167

Query: 564 TMRNMTSNFXIGFGSFVDK 620
            + N+T+N+ +GFGSF DK
Sbjct: 168 ALANLTANYQLGFGSFADK 186


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 86   YSW*TNPINFFKLSKAF 36
            YSW  +P+NF  + KA+
Sbjct: 1487 YSWENSPMNFDHVGKAY 1503


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,753
Number of Sequences: 2352
Number of extensions: 11123
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61050630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)