Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_P04
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical pr... 95 3e-20
U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta p... 95 3e-20
Z78544-4|CAB01762.3| 374|Caenorhabditis elegans Hypothetical pr... 31 0.89
U80815-10|AAO91678.1| 437|Caenorhabditis elegans Hypothetical p... 29 2.7
U80815-9|AAV34785.1| 361|Caenorhabditis elegans Hypothetical pr... 29 2.7
U80815-8|AAB37997.1| 498|Caenorhabditis elegans Hypothetical pr... 29 2.7
U80815-7|AAO91677.1| 473|Caenorhabditis elegans Hypothetical pr... 29 2.7
U80815-6|AAO91675.1| 464|Caenorhabditis elegans Hypothetical pr... 29 2.7
U80815-5|AAO91676.1| 439|Caenorhabditis elegans Hypothetical pr... 29 2.7
U80815-4|AAO91674.1| 524|Caenorhabditis elegans Hypothetical pr... 29 2.7
U80815-3|AAK73899.1| 499|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical pr... 27 8.3
AF036694-2|AAY86261.1| 176|Caenorhabditis elegans Hypothetical ... 27 8.3
>Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical
protein ZK1058.2 protein.
Length = 809
Score = 95.5 bits (227), Expect = 3e-20
Identities = 44/79 (55%), Positives = 56/79 (70%)
Frame = +3
Query: 384 VQMXPQXVKLXMRMNQMQKLTFAYSRAQDYPVDLYYLMDLSRSMKNDKEKLSALGSLLSA 563
VQ+ PQ + + +R + Y +A DYPVDLYYLMDLS SMK+DK+KLS LG LL+
Sbjct: 121 VQIKPQEMYVEIRPKSRVRFNVTYRQAVDYPVDLYYLMDLSYSMKDDKQKLSELGDLLAE 180
Query: 564 TMRNMTSNFXIGFGSFVDK 620
MR +T NF +GFGSF+DK
Sbjct: 181 RMRTVTKNFRLGFGSFIDK 199
>U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta
pat-3 protein.
Length = 809
Score = 95.5 bits (227), Expect = 3e-20
Identities = 44/79 (55%), Positives = 56/79 (70%)
Frame = +3
Query: 384 VQMXPQXVKLXMRMNQMQKLTFAYSRAQDYPVDLYYLMDLSRSMKNDKEKLSALGSLLSA 563
VQ+ PQ + + +R + Y +A DYPVDLYYLMDLS SMK+DK+KLS LG LL+
Sbjct: 121 VQIKPQEMYVEIRPKSRVRFNVTYRQAVDYPVDLYYLMDLSYSMKDDKQKLSELGDLLAE 180
Query: 564 TMRNMTSNFXIGFGSFVDK 620
MR +T NF +GFGSF+DK
Sbjct: 181 RMRTVTKNFRLGFGSFIDK 199
>Z78544-4|CAB01762.3| 374|Caenorhabditis elegans Hypothetical
protein K04G11.5 protein.
Length = 374
Score = 30.7 bits (66), Expect = 0.89
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = +3
Query: 483 LYYLMDLSRSMKNDKEKLSALGSLLSATMRNMTSNFXIGFG 605
+YY++ +++K D+ ++ + +L+SA + +M S IG+G
Sbjct: 99 IYYVISRLKTVKKDESCIANVDTLISAFLFSMESQHTIGYG 139
>U80815-10|AAO91678.1| 437|Caenorhabditis elegans Hypothetical
protein W02C12.3g protein.
Length = 437
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 69 VCLPTVFTNTFKTAVRGASPPTSMDLECFNPAMEGGTG 182
+ +P +N F+ V ++P +S+D+E A+ G G
Sbjct: 184 ITIPNAMSNNFRQVVSSSAPTSSIDIEKMIGAVSNGGG 221
>U80815-9|AAV34785.1| 361|Caenorhabditis elegans Hypothetical
protein W02C12.3h protein.
Length = 361
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 69 VCLPTVFTNTFKTAVRGASPPTSMDLECFNPAMEGGTG 182
+ +P +N F+ V ++P +S+D+E A+ G G
Sbjct: 47 ITIPNAMSNNFRQVVSSSAPTSSIDIEKMIGAVSNGGG 84
>U80815-8|AAB37997.1| 498|Caenorhabditis elegans Hypothetical
protein W02C12.3a protein.
Length = 498
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 69 VCLPTVFTNTFKTAVRGASPPTSMDLECFNPAMEGGTG 182
+ +P +N F+ V ++P +S+D+E A+ G G
Sbjct: 184 ITIPNAMSNNFRQVVSSSAPTSSIDIEKMIGAVSNGGG 221
>U80815-7|AAO91677.1| 473|Caenorhabditis elegans Hypothetical
protein W02C12.3f protein.
Length = 473
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 69 VCLPTVFTNTFKTAVRGASPPTSMDLECFNPAMEGGTG 182
+ +P +N F+ V ++P +S+D+E A+ G G
Sbjct: 159 ITIPNAMSNNFRQVVSSSAPTSSIDIEKMIGAVSNGGG 196
>U80815-6|AAO91675.1| 464|Caenorhabditis elegans Hypothetical
protein W02C12.3d protein.
Length = 464
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 69 VCLPTVFTNTFKTAVRGASPPTSMDLECFNPAMEGGTG 182
+ +P +N F+ V ++P +S+D+E A+ G G
Sbjct: 150 ITIPNAMSNNFRQVVSSSAPTSSIDIEKMIGAVSNGGG 187
>U80815-5|AAO91676.1| 439|Caenorhabditis elegans Hypothetical
protein W02C12.3e protein.
Length = 439
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 69 VCLPTVFTNTFKTAVRGASPPTSMDLECFNPAMEGGTG 182
+ +P +N F+ V ++P +S+D+E A+ G G
Sbjct: 125 ITIPNAMSNNFRQVVSSSAPTSSIDIEKMIGAVSNGGG 162
>U80815-4|AAO91674.1| 524|Caenorhabditis elegans Hypothetical
protein W02C12.3c protein.
Length = 524
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 69 VCLPTVFTNTFKTAVRGASPPTSMDLECFNPAMEGGTG 182
+ +P +N F+ V ++P +S+D+E A+ G G
Sbjct: 210 ITIPNAMSNNFRQVVSSSAPTSSIDIEKMIGAVSNGGG 247
>U80815-3|AAK73899.1| 499|Caenorhabditis elegans Hypothetical
protein W02C12.3b protein.
Length = 499
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 69 VCLPTVFTNTFKTAVRGASPPTSMDLECFNPAMEGGTG 182
+ +P +N F+ V ++P +S+D+E A+ G G
Sbjct: 185 ITIPNAMSNNFRQVVSSSAPTSSIDIEKMIGAVSNGGG 222
>Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical protein
T01E8.5 protein.
Length = 1270
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -2
Query: 70 TLLTFLSYRKH-FIFNRKAQQMXF 2
TL+TF S++KH FI+N +++ F
Sbjct: 1057 TLITFFSHKKHRFIYNENFKKLIF 1080
>Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical protein
T01E8.5 protein.
Length = 1270
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -2
Query: 70 TLLTFLSYRKH-FIFNRKAQQMXF 2
TL+TF S++KH FI+N +++ F
Sbjct: 1057 TLITFFSHKKHRFIYNENFKKLIF 1080
>AF036694-2|AAY86261.1| 176|Caenorhabditis elegans Hypothetical
protein CD4.11 protein.
Length = 176
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 330 NFP*SSLTLRKLPSLLPFPCDPLL 259
N P S+ +R + SL PFP P+L
Sbjct: 60 NLPYSATEIRSISSLTPFPVKPML 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,618,822
Number of Sequences: 27780
Number of extensions: 238167
Number of successful extensions: 621
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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