Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P04
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.4  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.8  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 171 GGTGGCDEAYIFNPDNQLFVDPAYNRDLSXAKGRMGMATG 290
           G  G C+  Y  NP+ + +     N  LS +      ATG
Sbjct: 103 GIVGECNIQYALNPNTEEYYIIEVNARLSRSSALASKATG 142


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 428 SNAKAYVCLFPGSRLSRRSVLSYGSQ*VHEERQREAQC 541
           S  K + C   G  L  ++ L       H ERQ E +C
Sbjct: 1   SAKKLFTCQLCGKVLCSKASLKRHVADKHAERQEEYRC 38


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = +3

Query: 171  GGTGGCDEAYIFNPDNQLFVDPA 239
            GG GGC    +      +  DP+
Sbjct: 968  GGMGGCQPGGVVQSQQPIMTDPS 990


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 200 HFQSRQSAVCRPC 238
           HFQ   SAVC  C
Sbjct: 395 HFQPLNSAVCALC 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,805
Number of Sequences: 438
Number of extensions: 2882
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)