Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_P03
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44) 53 2e-07
SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019) 33 0.27
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7) 31 1.1
SB_784| Best HMM Match : WAPL (HMM E-Value=2.4e-18) 30 1.9
SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28) 29 2.5
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 29 4.4
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_23339| Best HMM Match : I-set (HMM E-Value=1.3e-07) 28 5.8
>SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)
Length = 303
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Frame = +2
Query: 410 VSKDQSREFMAVFPDIVRDLTETGKH-IDVPEASKWLAKLLQYNVPNGKKNRGLATILAY 586
++ D + F FP V DL + ++ + + ++ KWL ++L+YNVP GK+NRGL+ I +
Sbjct: 13 LTSDDWKLFDDAFPGFVNDLVQEEENDLAIGDSIKWLREVLEYNVPGGKRNRGLSVIGSL 72
Query: 587 KMLXKKEN 610
+ L ++E+
Sbjct: 73 RHLIREEH 80
>SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)
Length = 1136
Score = 32.7 bits (71), Expect = 0.27
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 481 ASLSEIPDDVRKDSHELPGLVLGNGQSSG-SHRHFLRSQGRQESVIFLQLQQSLRSGFLS 305
ASL EI ++K EL + N QSS + F + ++ VIF QLQQ ++
Sbjct: 45 ASLKEIISGLKKQVEELENSLNSNKQSSKCEEKKFKQINSEKDKVIF-QLQQDIKDQHEE 103
Query: 304 LWRLARRL 281
+ RL + L
Sbjct: 104 IGRLQKSL 111
>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1183
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 271 EAGPVGEQVATG*GNRTEETAEAAKISQ 354
EAG +GE G N T ET+EA K S+
Sbjct: 616 EAGEIGEASEAGGANETSETSEAGKASE 643
>SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)
Length = 682
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Frame = +3
Query: 144 IEVLQKCSRQRKAXKSLCRRTKMKYAGTSARQLASPILMPWPRGWTSRRASRHRL-RKPD 320
I L++C R R K++C + K++ T+A + L+ R + R + R
Sbjct: 38 IRQLKRCVRFRYRRKNICEKFKLRSTATAATLWSRRPLICRSRRYRHRNGHNCSISRNSS 97
Query: 321 RRDC*SCKNI---TDSCRP*LL-RKCRWLPEDWPFPRTSPGS 434
C SC+ + SC LL R +P P TSP +
Sbjct: 98 SEICPSCRALETSLSSCLATLLVRPLETIPAPAPTTPTSPAT 139
>SB_784| Best HMM Match : WAPL (HMM E-Value=2.4e-18)
Length = 539
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Frame = +2
Query: 383 MPMATRGLAVSKDQSREFMA--VFPDIVRDL---TETGKHIDVPEASKW--LAKLLQYNV 541
MP T G SK + +E + +F ++ D+ T TG +DVP+ S W ++K ++Y
Sbjct: 1 MPKYT-GKTYSKSRKQECKSSSIFDEVKNDVESKTTTGSTLDVPKKSSWTRISKAVEYTK 59
Query: 542 PNGKKNR 562
K +
Sbjct: 60 EQSPKKK 66
>SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)
Length = 265
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = +2
Query: 314 TGPKRLLKLQKYHRFLSTLTPQEMPMATRGLAVSKDQSREFMAVFPDIVRDLTETGKHID 493
+G KRL++ ++ +R L +TP+ + + A +S++ P V + G D
Sbjct: 127 SGDKRLMRDKQVYRNLPEVTPEALEQVKKNYAWVAGESQKLNKHNPGHV--VVFMGSASD 184
Query: 494 VPEASKWLAKLLQYNVP 544
+ K A L +NVP
Sbjct: 185 IDHCKKIEAALKSFNVP 201
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +2
Query: 221 RHISKTTSVTNSDAMAPRLDQSASKSPQAEETGPKRLLKLQKY---HRFLSTLTPQEMPM 391
R IS +S +++++ PR++ SA +P + + PKR+ K + + R LS ++ P
Sbjct: 2344 RTISPASSRSSANS-GPRVEHSAGSTPSFDRSDPKRISKERIFVIKGRRLSVEQDKDKPD 2402
Query: 392 ATRGLAVSKDQS 427
T+ L ++ +
Sbjct: 2403 GTKTLESARSSA 2414
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 255 LMPWPRGWTSRRASRH 302
L WP+GWT+ A RH
Sbjct: 983 LTSWPQGWTAHEADRH 998
>SB_23339| Best HMM Match : I-set (HMM E-Value=1.3e-07)
Length = 423
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = +2
Query: 218 RRHISKTTSVTNSDAMAPRLDQSASKSP 301
R H KTTS SDA R D A KSP
Sbjct: 221 RFHSYKTTSTAQSDAFLNRTDWYAFKSP 248
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,359,468
Number of Sequences: 59808
Number of extensions: 407636
Number of successful extensions: 1191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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