Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_P03
(654 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl ... 43 8e-04
J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein. 43 8e-04
D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein. 43 8e-04
BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate sy... 43 8e-04
AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate sy... 43 8e-04
BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein. 33 0.67
BC031068-1|AAH31068.1| 429|Homo sapiens AADAT protein protein. 32 1.6
AF481738-1|AAM09683.1| 425|Homo sapiens alpha-aminoadipate amin... 32 1.6
AF097994-1|AAF04623.1| 425|Homo sapiens L-kynurenine/alpha-amin... 32 1.6
AC084866-3|AAY41030.1| 425|Homo sapiens unknown protein. 32 1.6
AK127273-1|BAC86911.1| 182|Homo sapiens protein ( Homo sapiens ... 31 3.6
AB051466-1|BAB21770.1| 1536|Homo sapiens KIAA1679 protein protein. 31 4.7
Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase... 30 8.3
U75308-1|AAC50901.1| 947|Homo sapiens TBP-associated factor pro... 30 8.3
AK074136-1|BAB84962.1| 358|Homo sapiens FLJ00209 protein protein. 30 8.3
>M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl
pyrophosphate synthetase mRNA (hpt807), 3' end. ).
Length = 346
Score = 43.2 bits (97), Expect = 8e-04
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +2
Query: 410 VSKDQSREFMAVFPDIVRDLTETGK-HIDVPEASKWLAKLLQYNVPNGKKNRGLATILAY 586
V + ++F+ F IVR LTE H ++ +A L ++L+YN GK NRGL ++A+
Sbjct: 2 VYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAF 61
Query: 587 KML 595
+ L
Sbjct: 62 REL 64
>J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein.
Length = 353
Score = 43.2 bits (97), Expect = 8e-04
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +2
Query: 410 VSKDQSREFMAVFPDIVRDLTETGK-HIDVPEASKWLAKLLQYNVPNGKKNRGLATILAY 586
V + ++F+ F IVR LTE H ++ +A L ++L+YN GK NRGL ++A+
Sbjct: 9 VYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAF 68
Query: 587 KML 595
+ L
Sbjct: 69 REL 71
>D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein.
Length = 420
Score = 43.2 bits (97), Expect = 8e-04
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +2
Query: 410 VSKDQSREFMAVFPDIVRDLTETGK-HIDVPEASKWLAKLLQYNVPNGKKNRGLATILAY 586
V + ++F+ F IVR LTE H ++ +A L ++L+YN GK NRGL ++A+
Sbjct: 76 VYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAF 135
Query: 587 KML 595
+ L
Sbjct: 136 REL 138
>BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 43.2 bits (97), Expect = 8e-04
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +2
Query: 410 VSKDQSREFMAVFPDIVRDLTETGK-HIDVPEASKWLAKLLQYNVPNGKKNRGLATILAY 586
V + ++F+ F IVR LTE H ++ +A L ++L+YN GK NRGL ++A+
Sbjct: 75 VYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAF 134
Query: 587 KML 595
+ L
Sbjct: 135 REL 137
>AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 43.2 bits (97), Expect = 8e-04
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +2
Query: 410 VSKDQSREFMAVFPDIVRDLTETGK-HIDVPEASKWLAKLLQYNVPNGKKNRGLATILAY 586
V + ++F+ F IVR LTE H ++ +A L ++L+YN GK NRGL ++A+
Sbjct: 75 VYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAF 134
Query: 587 KML 595
+ L
Sbjct: 135 REL 137
>BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein.
Length = 298
Score = 33.5 bits (73), Expect = 0.67
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 485 HIDVPEASKWLAKLLQYNVPNGKKNRGLATILAYKMLXKKENLXA 619
H + +A+ L ++L+YN GK +RGL ++A++ L + L A
Sbjct: 3 HPETGDATARLKEVLEYNAIGGKYHRGLMVLVAFRELVEPRKLDA 47
>BC031068-1|AAH31068.1| 429|Homo sapiens AADAT protein protein.
Length = 429
Score = 32.3 bits (70), Expect = 1.6
Identities = 24/77 (31%), Positives = 33/77 (42%)
Frame = +2
Query: 314 TGPKRLLKLQKYHRFLSTLTPQEMPMATRGLAVSKDQSREFMAVFPDIVRDLTETGKHID 493
TGPK L++ H +STL P + + FMA D V D K
Sbjct: 279 TGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMA-HVDRVIDFYSNQKDAI 337
Query: 494 VPEASKWLAKLLQYNVP 544
+ A KWL L +++VP
Sbjct: 338 LAAADKWLTGLAEWHVP 354
>AF481738-1|AAM09683.1| 425|Homo sapiens alpha-aminoadipate
aminotransferase protein.
Length = 425
Score = 32.3 bits (70), Expect = 1.6
Identities = 24/77 (31%), Positives = 33/77 (42%)
Frame = +2
Query: 314 TGPKRLLKLQKYHRFLSTLTPQEMPMATRGLAVSKDQSREFMAVFPDIVRDLTETGKHID 493
TGPK L++ H +STL P + + FMA D V D K
Sbjct: 275 TGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMA-HVDRVIDFYSNQKDAI 333
Query: 494 VPEASKWLAKLLQYNVP 544
+ A KWL L +++VP
Sbjct: 334 LAAADKWLTGLAEWHVP 350
>AF097994-1|AAF04623.1| 425|Homo sapiens
L-kynurenine/alpha-aminoadipate aminotransferase
protein.
Length = 425
Score = 32.3 bits (70), Expect = 1.6
Identities = 24/77 (31%), Positives = 33/77 (42%)
Frame = +2
Query: 314 TGPKRLLKLQKYHRFLSTLTPQEMPMATRGLAVSKDQSREFMAVFPDIVRDLTETGKHID 493
TGPK L++ H +STL P + + FMA D V D K
Sbjct: 275 TGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMA-HVDRVIDFYSNQKDAI 333
Query: 494 VPEASKWLAKLLQYNVP 544
+ A KWL L +++VP
Sbjct: 334 LAAADKWLTGLAEWHVP 350
>AC084866-3|AAY41030.1| 425|Homo sapiens unknown protein.
Length = 425
Score = 32.3 bits (70), Expect = 1.6
Identities = 24/77 (31%), Positives = 33/77 (42%)
Frame = +2
Query: 314 TGPKRLLKLQKYHRFLSTLTPQEMPMATRGLAVSKDQSREFMAVFPDIVRDLTETGKHID 493
TGPK L++ H +STL P + + FMA D V D K
Sbjct: 275 TGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMA-HVDRVIDFYSNQKDAI 333
Query: 494 VPEASKWLAKLLQYNVP 544
+ A KWL L +++VP
Sbjct: 334 LAAADKWLTGLAEWHVP 350
>AK127273-1|BAC86911.1| 182|Homo sapiens protein ( Homo sapiens
cDNA FLJ45340 fis, clone BRHIP3008714. ).
Length = 182
Score = 31.1 bits (67), Expect = 3.6
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 286 GEQVATG*GNRTEET-AEAAKISQIPVDPDSSGNADGYPRTGRFQGPVPGVHGCLSGHRQ 462
G +A G G + E + ++ V P +A G R QGPV VHG G
Sbjct: 98 GPHIAAGRGQEGDRVPGEHSHRARFHVPPHKHADATGGLAGRRHQGPVGQVHGLGRGFLA 157
Query: 463 GSH 471
G+H
Sbjct: 158 GAH 160
>AB051466-1|BAB21770.1| 1536|Homo sapiens KIAA1679 protein protein.
Length = 1536
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 408 PFP-RTSPGSSWLSFRTSSGISLRLASTLMFRKPANGWLSC 527
PF + S SSW S +S GI +R+ S + KP NG C
Sbjct: 926 PFDCKLSDWSSWGSCSSSCGIGVRIRSKWLKEKPYNGGRPC 966
>Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase II
transcription factor protein.
Length = 1083
Score = 29.9 bits (64), Expect = 8.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 380 PEESGSTGIC-DIFAASAVSSVRFPQPVATCSPTGPAS 270
P GS G C + AA+AV++ P P P GPA+
Sbjct: 128 PPPEGSAGACAPVPAAAAVAAGPEPAPAGPAKPAGPAA 165
>U75308-1|AAC50901.1| 947|Homo sapiens TBP-associated factor
protein.
Length = 947
Score = 29.9 bits (64), Expect = 8.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 380 PEESGSTGIC-DIFAASAVSSVRFPQPVATCSPTGPAS 270
P GS G C + AA+AV++ P P P GPA+
Sbjct: 24 PPPEGSAGACAPVPAAAAVAAGPEPAPAGPAKPAGPAA 61
>AK074136-1|BAB84962.1| 358|Homo sapiens FLJ00209 protein protein.
Length = 358
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +3
Query: 258 MPWPRGWTSR-RASRHRLRK 314
+PWPRGW R R+SR R R+
Sbjct: 337 LPWPRGWRGRERSSRLRRRR 356
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,078,815
Number of Sequences: 237096
Number of extensions: 2117996
Number of successful extensions: 6122
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6117
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -