Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P01
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   201   6e-53
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   200   7e-53
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   196   1e-51
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    29   0.31 
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    26   2.9  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   3.8  

>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  201 bits (490), Expect = 6e-53
 Identities = 92/153 (60%), Positives = 109/153 (71%)
 Frame = +3

Query: 42  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNV 221
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FF NKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 222 NPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 401
           NP+RG FHF APS I  K VRGM+PHKT RG+ AL  L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125

Query: 402 XXFCLKPXRNYCHVGRLSHEIGWKYRDVVRKLE 500
               LKP R YC VGRLS E+GWKY D+V KLE
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLE 158


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  200 bits (489), Expect = 7e-53
 Identities = 92/153 (60%), Positives = 109/153 (71%)
 Frame = +3

Query: 42  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNV 221
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FF NKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 222 NPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 401
           NP+RG FHF APS I  K VRGM+PHKT RG+ AL  L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125

Query: 402 XXFCLKPXRNYCHVGRLSHEIGWKYRDVVRKLE 500
               LKP R YC VGRLS E+GWKY D+V KLE
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLE 158


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  196 bits (479), Expect = 1e-51
 Identities = 87/153 (56%), Positives = 109/153 (71%)
 Frame = +3

Query: 42  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNV 221
           K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FF NKLK +++LRK C  
Sbjct: 6   KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 222 NPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 401
           NP+RG FHF APS I  K VRGM+PHKT RG  AL+ L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125

Query: 402 XXFCLKPXRNYCHVGRLSHEIGWKYRDVVRKLE 500
               LKP R YC +GRLS E+GWKY+++V KLE
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLE 158


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 69  HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNK 182
           H L  + AV  K++  G K VV+RC+ I  + +FF ++
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFFCSR 194


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -3

Query: 152 DLFAANHNNFVPFEKDLGDDCRQTAQQMTTAIDHYGLIAKARHFHN 15
           D+ A N       +  L    RQ  QQM T   +YGL+ KAR   N
Sbjct: 126 DVNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLV-KARKGRN 170


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 355 GHPSYVRSLLRAFLPRSVLCGIMP 284
           G+ SY+ + L+AFLP++V   + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,630
Number of Sequences: 5004
Number of extensions: 35112
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)