Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P01
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   206   1e-53
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   206   1e-53
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical p...    27   7.9  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  206 bits (502), Expect = 1e-53
 Identities = 93/157 (59%), Positives = 117/157 (74%)
 Frame = +3

Query: 30  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRK 209
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF  +KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 210 RCNVNPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 389
           RCN+NPARG FH+ AP  I W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 390 XXXXXXFCLKPXRNYCHVGRLSHEIGWKYRDVVRKLE 500
                 F L+P R +C VGRLSHE+GW+++DVV KLE
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLE 157


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  206 bits (502), Expect = 1e-53
 Identities = 93/157 (59%), Positives = 117/157 (74%)
 Frame = +3

Query: 30  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRK 209
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF  +KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 210 RCNVNPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 389
           RCN+NPARG FH+ AP  I W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 390 XXXXXXFCLKPXRNYCHVGRLSHEIGWKYRDVVRKLE 500
                 F L+P R +C VGRLSHE+GW+++DVV KLE
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLE 157


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = -2

Query: 483 HHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHS 316
           HH      H     H   +G V  R H E     H   +  E GTHH +     H+
Sbjct: 381 HHEHKEGEHHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435



 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
 Frame = -2

Query: 495 AYEQHHGISIQFHGTVCLHDS--NYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*E 322
           A+  HHG     HG    H S  ++G   +  H       H  G+    G HH +  S  
Sbjct: 537 AHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHH--GHHGSHGVHHGHHESHG 594

Query: 321 HSCHA 307
           H  HA
Sbjct: 595 HGHHA 599


>Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical
          protein F25D1.5 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 24 MTGFSNKAIVIDGRGHLLGRLAAVI 98
          M  FS K+++I G  + +GR AAVI
Sbjct: 1  MARFSGKSVIITGSSNGIGRSAAVI 25


>U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical
           protein C50E3.2 protein.
          Length = 168

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 494 LTNNITVFPSNFMGQSAYMTVITXRFQTE 408
           L NNI VFPSN + +++ MT+   R +T+
Sbjct: 27  LENNILVFPSN-ISEASGMTLFHGRIETK 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,138,122
Number of Sequences: 27780
Number of extensions: 209585
Number of successful extensions: 445
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)