Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O20
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    40   3e-04
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    27   2.3  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    26   4.1  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    26   4.1  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   5.4  
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    26   5.4  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    26   5.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.4  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   7.2  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    25   9.5  

>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
 Frame = +2

Query: 305 LTQFLCCSIFVFIFYLAYGYFLELIFAKP---EVXPVSLYITLVQFMITMLLXYGESWIX 475
           + Q   C I ++  +L++    E I  +P   E       ++L Q  +T+L     +W  
Sbjct: 5   MRQLFVCMIGIYGSFLSWAVMQEKIITRPYDGERFSSPALLSLAQSFMTVLCGLLWNWFH 64

Query: 476 NPIKRKV--P--LKTYAVLAALTLGTMSFSNLALSYLNYPTQLIFKSCKLIPVMIGXIII 643
               R +  P  L  ++ +A     +  F   ++ +L+YPT ++ KSCKL+PV+   + +
Sbjct: 65  GVSARGLLEPKFLGYFSSIAISASLSSYFGYASMFHLSYPTVILGKSCKLLPVIALHVFV 124

Query: 644 MRK 652
            ++
Sbjct: 125 YKR 127


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 219 VSFTEFILSDDISITHHIYLFLFMYX*ADMV*IFMLPNGLIFKVCK 82
           V+  EFI+S     T    L  F Y  A MV + + P+   FK+CK
Sbjct: 73  VALEEFIISQCEQNTQ-CALITFWYLQAHMVDLGLQPHSSCFKICK 117


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 176 VMEMSSDKMNSVKETFIRIDDENSRSSKTEINILCFDITNYSQLTQFLCCSIFVFIFYL 352
           + + + D +   KE  I++  E+ R +KTE N  CFD ++ S+L   L   +  F + L
Sbjct: 211 IPQSTKDLLRIWKEAKIQMH-EDFRCNKTEFNEACFDASS-SRLGCILMDGLSTFYWQL 267


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 149 INRNKYM*CVMEMSSDKMNSVKETFIRIDDENSRSSK 259
           +N+   +  V+E   + MN+  E  I++DD+NS + K
Sbjct: 142 LNKRPVIFSVIEQILEDMNNFCECMIQLDDQNSINIK 178


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +2

Query: 284 DITNYSQLTQFLCCSIFVFIFYLAYGYFLELIFAKPEVXPVSLYITLVQFMITMLL 451
           DI NY  +     C + +F+F +  G F +++ A   +  +  Y  L    +T LL
Sbjct: 354 DIVNYMSVDTQKVCDLTMFLFVIVSGPF-QIVLALTNLYHLVGYGALSGAFVTFLL 408


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 526 IDIRNNVIFEFSFKLFELSNSVDIQEL 606
           ID+++  IF F +KL EL N  DI  L
Sbjct: 169 IDLQSQWIFCFCYKLPELLNGEDISTL 195


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 526 IDIRNNVIFEFSFKLFELSNSVDIQEL 606
           ID+++  IF F +KL EL N  DI  L
Sbjct: 169 IDLQSQWIFCFCYKLPELLNGEDISTL 195


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/59 (18%), Positives = 29/59 (49%)
 Frame = +2

Query: 173  CVMEMSSDKMNSVKETFIRIDDENSRSSKTEINILCFDITNYSQLTQFLCCSIFVFIFY 349
            C ++   + +N    + + + DEN  S K ++ ++  ++ ++ +    LC + F   F+
Sbjct: 1766 CCLDAVFNFINDGISSLVLLADENELSIKKKVTLMFNELLHFKETVGLLCKNSFNNYFW 1824


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 295 LQSINSVPVLFDIRFYILFSLRILLGINICKT 390
           L+   +  ++F    Y +F+L  LLGI  CKT
Sbjct: 440 LRLFETYNLIFPCNQYWVFNLEFLLGIYQCKT 471


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +2

Query: 251 SSKTEINILCFDITNYSQLTQFLCCSIFVFIFYLAYGYFLELIFAKPEV---XPVSLYI 418
           S  T ++IL F + + S   Q L  S F+F   L+  YFL     +P++    P++++I
Sbjct: 179 SLTTTLSILPFPVNHGSSFGQELKSSAFLFRNNLSDRYFLAFGDVEPDMVASEPLNIHI 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,417
Number of Sequences: 5004
Number of extensions: 47033
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)