Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O20
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0124 + 971213-971341,971741-971769,971877-972078,972839-97...    62   5e-10
05_01_0119 + 820566-820739,822708-822737,823153-823266,823341-82...    46   3e-05
06_03_0629 + 22920206-22920291,22920430-22920527,22920657-229207...    34   0.085
10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251           28   7.4  
02_05_0564 + 30003817-30005778                                         28   7.4  

>03_01_0124 +
           971213-971341,971741-971769,971877-972078,972839-973081,
           973172-973273,973743-974180
          Length = 380

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
 Frame = +2

Query: 287 ITNYSQLTQFLCCSIFVFIFYLAYGYFLELIFAKPEVXPVSLYITLVQFMITMLLXYGES 466
           +T+  +  QFL CS   F  YL  G   E ++ + +      Y T VQ  + + L   + 
Sbjct: 16  LTDRPRWQQFLICSSGFFFGYLVNGICEEYVYNRLQFS-FGWYFTFVQGFVYLGLIRLQG 74

Query: 467 WIXNPIKRKV-PLKTYAVLAALTLGTMSFSNLALSYLNYPTQLIFKSCKLIPVMI 628
           +    +K+ V P +TY  L+A+ +G+   +  +L++LNYP Q++FKS K++PVMI
Sbjct: 75  FT---VKQMVNPWRTYVRLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMI 126


>05_01_0119 +
           820566-820739,822708-822737,823153-823266,823341-823433,
           823521-823586,824076-824174,824480-824559,825039-825151,
           825600-825688,825955-826041,826128-826130,826285-826383
          Length = 348

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 22/52 (42%), Positives = 32/52 (61%)
 Frame = +2

Query: 497 PLKTYAVLAALTLGTMSFSNLALSYLNYPTQLIFKSCKLIPVMIGXIIIMRK 652
           PL+ Y V++   + T +    AL Y+++P Q + K  K+IPVMI   IIMRK
Sbjct: 117 PLQKYCVVSVSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTIIMRK 168


>06_03_0629 +
           22920206-22920291,22920430-22920527,22920657-22920796,
           22921596-22921626,22922025-22922128,22922439-22922560,
           22922651-22923050,22923245-22923268
          Length = 334

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +2

Query: 491 KVPLKTY-AVLAALTLGTMSFSNLALSYLNYPTQLIFKSCKLIPVMIGXIII 643
           + PL+ Y  V    T+G  +    AL +++YP Q++ KS K+IPVM+   I+
Sbjct: 76  RAPLRKYWGVSITNTVGP-AMGIEALKFISYPAQVLAKSSKMIPVMLMGTIL 126


>10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251
          Length = 148

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 230 IDDENSRSSKTEINILCFDI--TNYSQLTQ 313
           IDD NS   +TE+ +  FDI    Y QL+Q
Sbjct: 96  IDDPNSILVRTELGVFMFDIELNEYEQLSQ 125


>02_05_0564 + 30003817-30005778
          Length = 653

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 476 NPIKRKVPLKTYAVLAALTLGTMSFSNL 559
           N I R++P K Y+ L  L  GT+ F  L
Sbjct: 497 NQIPREIPAKNYSWLLVLGAGTLPFGTL 524


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,508,881
Number of Sequences: 37544
Number of extensions: 232062
Number of successful extensions: 412
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)