Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_O20
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00067-9|AAK20073.1| 364|Caenorhabditis elegans Hypothetical pr... 122 3e-28
AL132904-16|CAC35849.1| 340|Caenorhabditis elegans Hypothetical... 59 3e-09
U00067-10|ABD94100.1| 247|Caenorhabditis elegans Hypothetical p... 56 2e-08
Z68215-8|CAA92454.1| 318|Caenorhabditis elegans Hypothetical pr... 34 0.10
AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer... 28 5.0
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ... 28 5.0
AF125952-2|AAD14700.1| 478|Caenorhabditis elegans Hypothetical ... 28 6.6
AC024877-4|ABQ13047.1| 697|Caenorhabditis elegans Phosphodieste... 28 6.6
AC024877-3|AAF60898.1| 760|Caenorhabditis elegans Phosphodieste... 28 6.6
AC006722-8|AAK68418.2| 478|Caenorhabditis elegans Hypothetical ... 28 6.6
AL032663-6|CAA21766.2| 349|Caenorhabditis elegans Hypothetical ... 27 8.7
>U00067-9|AAK20073.1| 364|Caenorhabditis elegans Hypothetical
protein F54E7.1a protein.
Length = 364
Score = 122 bits (293), Expect = 3e-28
Identities = 59/129 (45%), Positives = 81/129 (62%)
Frame = +2
Query: 266 INILCFDITNYSQLTQFLCCSIFVFIFYLAYGYFLELIFAKPEVXPVSLYITLVQFMITM 445
I++L F+I + QF+ S+ +FI Y+ YGY ELIF P + P +TL+QF+I
Sbjct: 26 IHLLGFNIARKPKWLQFVLLSLAIFILYIGYGYMQELIFKLPGMKPFGWTLTLIQFLIYS 85
Query: 446 LLXYGESWIXNPIKRKVPLKTYAVLAALTLGTMSFSNLALSYLNYPTQLIFKSCKLIPVM 625
Y E I + KR +P + Y V+A T+ TM SN ++ YLNYPTQ+IFK CKLIPV+
Sbjct: 86 GCGYTECIIWHNTKRMIPWRIYGVIAFFTVATMGLSNASVGYLNYPTQVIFKCCKLIPVL 145
Query: 626 IGXIIIMRK 652
IG I+I K
Sbjct: 146 IGGILIQGK 154
>AL132904-16|CAC35849.1| 340|Caenorhabditis elegans Hypothetical
protein Y111B2A.20 protein.
Length = 340
Score = 58.8 bits (136), Expect = 3e-09
Identities = 43/119 (36%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Frame = +2
Query: 314 FLCCSIFVFIFYLAYGYFLE-LIFAKPEVXPVSLY-ITLVQFMITMLLXYGESWIXNPIK 487
FL C+ + I Y +G E ++ K E+ S+ T Q ++ L + K
Sbjct: 24 FLICAGGILICYFVFGIQQERIVQGKYELPDESIEKFTFTQALVFFLCTANTIYAFLIRK 83
Query: 488 R----KVPLKTYAVLAALTLGTMSFSNLALSYLNYPTQLIFKSCKLIPVMIGXIIIMRK 652
+ VP K YA AA L M SN AL YL YPTQ++ KSCK IPVMI ++ K
Sbjct: 84 KTEIDNVPTKMYAASAASYLLAMVASNQALQYLPYPTQVLAKSCKPIPVMIFGVLFAHK 142
>U00067-10|ABD94100.1| 247|Caenorhabditis elegans Hypothetical
protein F54E7.1b protein.
Length = 247
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/37 (64%), Positives = 29/37 (78%)
Frame = +2
Query: 542 MSFSNLALSYLNYPTQLIFKSCKLIPVMIGXIIIMRK 652
M SN ++ YLNYPTQ+IFK CKLIPV+IG I+I K
Sbjct: 1 MGLSNASVGYLNYPTQVIFKCCKLIPVLIGGILIQGK 37
>Z68215-8|CAA92454.1| 318|Caenorhabditis elegans Hypothetical
protein C53B4.6 protein.
Length = 318
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +2
Query: 482 IKRKVPLKTYAVLAALTLGTMSFSNLALSY-LNYPTQLIFKSCKLIPVM-IGXII 640
+ ++P+K+YA + A+ +NLAL + + +P +IFKS L+ M +G II
Sbjct: 56 VPNRIPIKSYAKIVAIFFTVNMTNNLALKFAIYFPLFIIFKSGTLLTNMTMGWII 110
>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform b protein.
Length = 1051
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 341 IFYLAYGYFLELIFAKPEVXPVSLYIT--LVQFMITMLLXYGESWIXNPIKRKVPLKTYA 514
I +A+ F I V P+SLY++ +++F+ ++ + Y ++ VP K +
Sbjct: 72 IALIAFLQFFSYIILLNTVVPISLYVSVEIIRFIHSLWINYDTQMYYENGEKSVPAKAHT 131
Query: 515 VLAALTLGTMSF 550
LG + +
Sbjct: 132 TTLNEELGQVQY 143
>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform a protein.
Length = 1222
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 341 IFYLAYGYFLELIFAKPEVXPVSLYIT--LVQFMITMLLXYGESWIXNPIKRKVPLKTYA 514
I +A+ F I V P+SLY++ +++F+ ++ + Y ++ VP K +
Sbjct: 243 IALIAFLQFFSYIILLNTVVPISLYVSVEIIRFIHSLWINYDTQMYYENGEKSVPAKAHT 302
Query: 515 VLAALTLGTMSF 550
LG + +
Sbjct: 303 TTLNEELGQVQY 314
>AF125952-2|AAD14700.1| 478|Caenorhabditis elegans Hypothetical
protein C01B4.8 protein.
Length = 478
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 215 ETFIRIDDENSRSSKTEINILCFDITNYSQLTQFLCCSIFVFIFYLAYGY 364
E I DE S +S+ ILC ++T Y L L C + + LA+ +
Sbjct: 8 EEKIEKSDEMSENSRKTSKILCCNLTRYLILILTLTCLTLLQMNSLAFNF 57
>AC024877-4|ABQ13047.1| 697|Caenorhabditis elegans
Phosphodiesterase protein 6, isoformb protein.
Length = 697
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 282 KHNILISVFDDLLFSSSILMKVSFTEFILSDDISITHHIYLFLF 151
+HN +++F L I M+ + E +L+ DIS H YL F
Sbjct: 585 QHNANVNIFSSLSREEFIQMRHAMVEMVLATDIS-RHFEYLAKF 627
>AC024877-3|AAF60898.1| 760|Caenorhabditis elegans
Phosphodiesterase protein 6, isoforma protein.
Length = 760
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 282 KHNILISVFDDLLFSSSILMKVSFTEFILSDDISITHHIYLFLF 151
+HN +++F L I M+ + E +L+ DIS H YL F
Sbjct: 585 QHNANVNIFSSLSREEFIQMRHAMVEMVLATDIS-RHFEYLAKF 627
>AC006722-8|AAK68418.2| 478|Caenorhabditis elegans Hypothetical
protein Y19D10A.5 protein.
Length = 478
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 215 ETFIRIDDENSRSSKTEINILCFDITNYSQLTQFLCCSIFVFIFYLAYGY 364
E I DE S +S+ ILC ++T Y L L C + + LA+ +
Sbjct: 8 EEKIEKSDEMSENSRKTSKILCCNLTRYLILILTLTCLTLLQMNSLAFNF 57
>AL032663-6|CAA21766.2| 349|Caenorhabditis elegans Hypothetical
protein Y75B12B.7 protein.
Length = 349
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 305 LTQFLCCSIFVFIFYLAYGYFLELIFAKPEVXPVSLYITL-VQFMITMLLXYGESWI 472
L F CS F+ F + F+ +FA ++ P+ L TL + M+ + W+
Sbjct: 256 LILFTLCSFFISTFPIIIANFMLPLFANLQIIPLILIRTLTISTMLQTINAATHGWV 312
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,078,812
Number of Sequences: 27780
Number of extensions: 256490
Number of successful extensions: 582
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -