Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O19
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   1.7  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    25   4.0  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   9.1  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    24   9.1  

>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 981

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 311  DFDGLFNFXKLINKEVDLSDTNHKYIVMQYVTESLLMHSQXTKTG 445
            DF  L ++ K + K+VD    +H    +Q+ T+  L  S     G
Sbjct: 910  DFVTLEDWLKALEKDVDEKGEDHPLFALQHATKFALKSSMTPSNG 954


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 173 HMILGEGYVRLLL-EANHDVTYLTPAPLKIGHPKLXQIDVSSTEKGFDFD 319
           H I+G+  ++ +  E +H V  LT    K   P+  +IDV     G+D +
Sbjct: 301 HQIMGDTDIQSIKNEGDHLVVQLTSQMDKSKKPETRKIDVLYVATGYDHE 350


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/46 (21%), Positives = 26/46 (56%)
 Frame = +2

Query: 131 AYKLLAVFPFPGKSHMILGEGYVRLLLEANHDVTYLTPAPLKIGHP 268
           A+K+  +F    KSH ++ + Y++++    +++   + + +  GHP
Sbjct: 677 AFKIWCMFALDPKSHYMIEDPYMKVVEPLENEI---SESEMCFGHP 719


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = +2

Query: 338  KLINKEV---DLSDTNHKYIVMQYVTESLLM 421
            +L NKE    +LSD + KYI +Q + E+LL+
Sbjct: 1132 ELENKEEKCQNLSDASLKYIELQEIHENLLL 1162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,257
Number of Sequences: 5004
Number of extensions: 28110
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)