Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O18
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    44   1e-05
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    25   6.3  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = +1

Query: 13  MHHAAGAFVXLSCPKE-NARPATASSTLRTMLQLQLVIADVXPATGRAADTSKM-YVVCG 186
           M + AG  V L  P++ +A      +     +Q+ +   D   A GR     K  Y + G
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD---AEGRQIPGEKTTYAISG 57

Query: 187 AIRRMGESDDCIVRLTXKDGIL 252
            +R  GESDDCI RLT +DG+L
Sbjct: 58  FVRSKGESDDCINRLTTQDGLL 79


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 260 FLASIPSXFVNLTMQSSDSPILRIAPQTTYILDVSAARP 144
           F  S+P   V L     D+P + + P ++YI   SA  P
Sbjct: 288 FPLSLPGQSVELAW---DAPGMAVGPNSSYITSTSAGTP 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,259,018
Number of Sequences: 5004
Number of extensions: 19631
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)