Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O18
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...    58   3e-09
AC024839-8|AAF60825.1|  383|Caenorhabditis elegans Hypothetical ...    27   5.5  
AC024839-7|AAF60827.1|  383|Caenorhabditis elegans Hypothetical ...    27   5.5  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = +1

Query: 13  MHHAAGAFVXLSCPKENARPATASSTLRTMLQLQLVIADVXPATGRAAD-TSKMYVVCGA 189
           M + AG  V L  P++ +         +    +Q+   DV P TGR     S  Y +CGA
Sbjct: 1   MQNDAGQTVELYVPRKCSSSNRIIGP-KDHASVQIDFVDVDPETGRMIPGKSTRYAICGA 59

Query: 190 IRRMGESDDCIVRLTXKDGILAKN 261
           IRRMGESDD I+RL  KDG++ ++
Sbjct: 60  IRRMGESDDAILRLAQKDGLVPRD 83


>AC024839-8|AAF60825.1|  383|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.8 protein.
          Length = 383

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
 Frame = +1

Query: 19  HAAGAFVXLSCPKENARPATASSTLRTMLQLQLVIADVXPATGRAADTSKMYVVCGAIRR 198
           HAA  F+  +  ++ A+  +    L  + +L+L++ D       A + S   ++   +  
Sbjct: 99  HAAVVFLPTNL-RDFAQKCSDPHELSLLAKLELIVFD----ESTALNPSSAVLLSKTVAT 153

Query: 199 MGESDD-CIVRLTXKDGILAKNY*HLVHQTT 288
             +++D CIV    K G+L + Y  L+ + T
Sbjct: 154 WAQNNDGCIVGSRKKYGLLGQRYSELIDRVT 184


>AC024839-7|AAF60827.1|  383|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.2 protein.
          Length = 383

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
 Frame = +1

Query: 19  HAAGAFVXLSCPKENARPATASSTLRTMLQLQLVIADVXPATGRAADTSKMYVVCGAIRR 198
           HAA  F+  +  ++ A+  +    L  + +L+L++ D       A + S   ++   +  
Sbjct: 99  HAAVVFLPTNL-RDFAQKCSDPHELSLLAKLELIVFD----ESTALNPSSAVLLSKTVAT 153

Query: 199 MGESDD-CIVRLTXKDGILAKNY*HLVHQTT 288
             +++D CIV    K G+L + Y  L+ + T
Sbjct: 154 WAQNNDGCIVGSRKKYGLLGQRYSELIDRVT 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,339,852
Number of Sequences: 27780
Number of extensions: 120772
Number of successful extensions: 236
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)