Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O16
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    81   4e-17
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    79   1e-16
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   1.0  
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    25   2.3  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   4.1  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   4.1  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    24   7.1  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 81.0 bits (191), Expect = 4e-17
 Identities = 36/63 (57%), Positives = 41/63 (65%)
 Frame = +2

Query: 23  CGISSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG 202
           CG  S+HIQKS CA CGYPAAK RSY+W  KA          M +LK V R F+NGF+ G
Sbjct: 22  CGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRAG 81

Query: 203 KPT 211
           KPT
Sbjct: 82  KPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 79.4 bits (187), Expect = 1e-16
 Identities = 35/62 (56%), Positives = 40/62 (64%)
 Frame = +2

Query: 23  CGISSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG 202
           CG  S+HIQKS CA CGYPAAK RSY+W  KA          M +LK V R F+NGF+ G
Sbjct: 22  CGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRSG 81

Query: 203 KP 208
           KP
Sbjct: 82  KP 83


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 168 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 55
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 10  LCTHLWYLVISHSKIKMRPMWIS 78
           LC+HL+ +V   +K++ R  W S
Sbjct: 117 LCSHLYKIVTKTTKVEGRKCWTS 139


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 11  YALICGISSYHIQKSKCAQC 70
           YAL+ G  SYH +  +C  C
Sbjct: 88  YALMSGYDSYHRECFRCHDC 107


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 15  HSSVVSRHITFKNQNAPNVDILQQNY 92
           HS  VS+H++ +++  PN  I   +Y
Sbjct: 790 HSDKVSQHLSLRDEGTPNHLIKHNSY 815


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 64  PMWISCSKITILPLVSEG*AQEDYW 138
           P W+SC+++ +L    +    +D W
Sbjct: 272 PTWLSCARLPLLKAFKDVIGLKDVW 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,040,166
Number of Sequences: 5004
Number of extensions: 16452
Number of successful extensions: 37
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)