Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O16
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical pr...    79   1e-15
Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical pr...    72   9e-14
Z81586-10|CAD56598.1|  349|Caenorhabditis elegans Hypothetical p...    26   5.8  

>Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical
           protein W01D2.1 protein.
          Length = 92

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 33/66 (50%), Positives = 41/66 (62%)
 Frame = +2

Query: 23  CGISSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG 202
           CG SS+HIQK +CA CGYP AK R+Y+W  K+           RHL+ V  RFRNGF+EG
Sbjct: 22  CGKSSFHIQKKRCASCGYPDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFREG 81

Query: 203 KPTPPK 220
               P+
Sbjct: 82  TTPKPR 87


>Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical
           protein C54C6.1 protein.
          Length = 91

 Score = 72.1 bits (169), Expect = 9e-14
 Identities = 31/64 (48%), Positives = 38/64 (59%)
 Frame = +2

Query: 23  CGISSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG 202
           CG SS+HIQK +CA CGY  AK R+Y+W  K+           RHL+ V  RFRNGF+  
Sbjct: 22  CGKSSFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFRGT 81

Query: 203 KPTP 214
            P P
Sbjct: 82  TPKP 85


>Z81586-10|CAD56598.1|  349|Caenorhabditis elegans Hypothetical
           protein T05F1.13 protein.
          Length = 349

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = +1

Query: 13  CTHLWYLVISHSKIKMRPMWISCSKI 90
           C+  W+ +IS  K +++ ++I+C ++
Sbjct: 31  CSEAWFHLISSFKTRIKELYINCKEL 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,859,147
Number of Sequences: 27780
Number of extensions: 94209
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)