Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_O13
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 109 4e-25
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 59 4e-10
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 54 2e-08
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 51 1e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 50 3e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 49 6e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 48 8e-07
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 47 2e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 1e-05
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 44 2e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 44 2e-05
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 44 2e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 43 3e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 43 4e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 9e-05
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 38 8e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 8e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 37 0.003
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.003
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.006
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 35 0.010
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 34 0.018
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 33 0.032
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 32 0.074
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 31 0.097
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 31 0.097
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 31 0.097
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.13
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 30 0.22
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.30
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.69
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 1.6
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 27 2.1
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 2.1
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 2.8
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 3.7
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 25 8.5
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 109 bits (261), Expect = 4e-25
Identities = 54/147 (36%), Positives = 85/147 (57%), Gaps = 5/147 (3%)
Frame = +2
Query: 86 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTDKELRD 262
+ +N D +NQ + +G +S + N+ E +P +D K+F+GGL+WETTD LRD
Sbjct: 123 DGENSKNDNYNENQ-SALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 263 HFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPXSIXKVMAAGEH----TINNXKVXPKX 430
+F +GE+ V D TGRSRGF F+ FK P + +VM+ H I+ + P+
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPRE 241
Query: 431 AKARHGKIFVGGLXSEISHDEIRNFFS 511
+ + K+FVGG+ + + +E RNFF+
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFN 268
Score = 54.0 bits (124), Expect = 2e-08
Identities = 24/75 (32%), Positives = 41/75 (54%)
Frame = +2
Query: 209 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPXSIXKVMAA 388
K+FVGG+ + T++E R+ F +G + + D +TGR RGF F+ ++ ++ M+
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 389 GEHTINNXKVXPKXA 433
TI+ V K A
Sbjct: 308 PYITIHGKPVEVKRA 322
Score = 28.7 bits (61), Expect = 0.69
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 513 EFGTILXVEMPFDKTKNQXKGFCFITFES 599
+FG +L + DK + +GF F+T+E+
Sbjct: 269 QFGRVLDATLMMDKDTGRPRGFGFVTYEN 297
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 513 EFGTILXVEMPFDKTKNQXKGFCFITFES 599
+FG +L + D T + +GF F+TF++
Sbjct: 185 QFGEVLDCTVMRDSTTGRSRGFGFLTFKN 213
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 59.3 bits (137), Expect = 4e-10
Identities = 28/97 (28%), Positives = 49/97 (50%)
Frame = +2
Query: 110 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIX 289
I ++ +G S ++ ++ LFVG L +ETTD +L++HFG G+I
Sbjct: 196 IKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIR 255
Query: 290 SINVKTDPNTGRSRGFAFIVFKAPXSIXKVMAAGEHT 400
+ + T +TG+ +GF F+ F + K M G ++
Sbjct: 256 RVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 54.0 bits (124), Expect = 2e-08
Identities = 25/64 (39%), Positives = 36/64 (56%)
Frame = +2
Query: 212 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPXSIXKVMAAG 391
+FVG LS+ T+ +L FG G+I SI + TDP +GR +GF ++ F S K +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 392 EHTI 403
H I
Sbjct: 428 GHFI 431
Score = 48.8 bits (111), Expect = 6e-07
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 188 PGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 361
P +D + +FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 362 XSIXKVMAA 388
+ +AA
Sbjct: 315 EAAKAAVAA 323
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 513 EFGTILXVEMPFDKTKNQXKGFCFITFES 599
E+GTI+ + D + KG+ ++ FE+
Sbjct: 285 EYGTIVGARVIMDGQSGRSKGYGYVDFET 313
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 50.8 bits (116), Expect = 1e-07
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Frame = +2
Query: 176 SAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIV 349
S G+++DRK LFVG L +++ + L+ HF G++ S+ + TD +GR +G+AF+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 350 FKAP 361
F P
Sbjct: 140 FINP 143
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 519 GTILXVEMPFDKTKNQXKGFCFITF 593
G + V +P DKT + KG+ F+ F
Sbjct: 116 GQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 49.6 bits (113), Expect = 3e-07
Identities = 23/67 (34%), Positives = 36/67 (53%)
Frame = +2
Query: 194 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPXSIX 373
+D R +FVG L++E ++ L +FG G I + + DP T +GFA+I FK +
Sbjct: 266 QDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVD 325
Query: 374 KVMAAGE 394
K + E
Sbjct: 326 KALLLNE 332
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 48.8 bits (111), Expect = 6e-07
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +2
Query: 200 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPXSIXKV 379
D + ++VG + + T +EL+ HF + G + + + D TG +GFA+I F P +
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 380 MAAGEHTINN--XKVXPK 427
+ ++ KV PK
Sbjct: 113 LLLNGSMLHERPLKVTPK 130
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 48.4 bits (110), Expect = 8e-07
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +2
Query: 194 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 352
RDD L V LS +T ++ELRD F +G I + + D TGR++GFAF+ +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 47.2 bits (107), Expect = 2e-06
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +2
Query: 137 NAENGGGDSQDHNSAEAPGRDDDR---KLFVGGLSWETTDKELRDHFGAYGEIXSINVKT 307
+ E+ G S D NS RD++ +FV L +E T++EL +HF +G + +
Sbjct: 251 DVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVK 310
Query: 308 DPNTGRSRGFAFIVFK 355
DP T RS G FI F+
Sbjct: 311 DPATDRSLGRGFIKFR 326
Score = 40.3 bits (90), Expect = 2e-04
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 212 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 352
LFV L+++T +L + F G I V T+P TG +RG+ F+ F
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.4 bits (100), Expect = 1e-05
Identities = 21/78 (26%), Positives = 40/78 (51%)
Frame = +2
Query: 119 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSIN 298
+++++ N E+ D ++ SA + LFV G++ + EL+ F +G + +
Sbjct: 72 EDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131
Query: 299 VKTDPNTGRSRGFAFIVF 352
+ +P T SRGF F+ F
Sbjct: 132 IMREPVTKASRGFGFLSF 149
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +2
Query: 167 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFI 346
D+N + G + ++FV +S T ++LR HF ++GE+ +++K +P TG S G I
Sbjct: 82 DYNE-NSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCI 140
Query: 347 VFKAPXSI 370
F SI
Sbjct: 141 SFDKRSSI 148
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +2
Query: 197 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 355
D + +F+ LS++T + ++ F YG I I V + TG+S G+AF+VF+
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 43.6 bits (98), Expect = 2e-05
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +2
Query: 143 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 322
E G G ++ P + VG LS++ T+ +L D FG + SI + DP T
Sbjct: 74 EGGMGSGYQRDAIPIPS-EPPFTAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTE 130
Query: 323 RSRGFAFIVFKAPXSIXKVMA-AGE 394
RSRGF ++ F+ ++ +A +GE
Sbjct: 131 RSRGFGYVEFETADTLSAALALSGE 155
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 212 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPXSIXKVM 382
LF+ L E D+ L+ F A+G I S + TD G+S+GF F+ + P K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
Score = 35.5 bits (78), Expect = 0.006
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Frame = +2
Query: 212 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPXSIXKVMAAG 391
L+VG L T+ L + F + G + SI V D T RS G+A++ F K +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 392 EHTINNXKV--------XPKXAKARHGKIFVGGLXSEISHDEIRNFFS 511
+T+ + P K G +F+ L I + + + FS
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFS 189
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 42.7 bits (96), Expect = 4e-05
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +2
Query: 200 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPXSIXKV 379
D +++G L ++ + ++ F +GE IN+ D TG+S+GFAF+ ++ S V
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS--TV 86
Query: 380 MAAGEHTINNXKVXPKXAKARH 445
+A T N K+ + + H
Sbjct: 87 LAVDNMT--NVKLLDRLVRVDH 106
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 510 AEFGTILXVEMPFDKTKNQXKGFCFITFE 596
+EFG + + + DK + KGF F+ +E
Sbjct: 52 SEFGEPVDINLVRDKETGKSKGFAFLKYE 80
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.5 bits (93), Expect = 9e-05
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +2
Query: 212 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 355
++VG L W T+D+ L D F G + + +P TGRS+GF + F+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFE 328
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.3 bits (85), Expect = 8e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +2
Query: 212 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 355
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 38.3 bits (85), Expect = 8e-04
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +2
Query: 200 DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPXSIXKV 379
D R +FV L+ T +EL D F G + + D +GRS+G A++ F S+
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
Query: 380 MA 385
+A
Sbjct: 298 IA 299
Score = 35.1 bits (77), Expect = 0.008
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +2
Query: 209 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPXS 367
+L V + + TD++++ F +G+I ++++ D + RS+GF +I ++ P S
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 36.7 bits (81), Expect = 0.003
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +2
Query: 212 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 352
+FVG + ++ +++++ + F G + + + DP TG +G+ F F
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 209 KLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 355
+LFVG L + D+ L F Y + V D G++RGF F+ FK
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 35.5 bits (78), Expect = 0.006
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +2
Query: 212 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 361
++VG + +E ++++ D F G + S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 34.7 bits (76), Expect = 0.010
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +2
Query: 158 DSQDHNSAEAPGRD-DDRKLFVGGLSWE--TTDKELRDHFGAYGEIXSINVKTDPNTGRS 328
DS +S P D L+V L T +L D F +G I S + PN+G S
Sbjct: 365 DSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGIS 424
Query: 329 RGFAFIVFK 355
+G+ F+ F+
Sbjct: 425 KGYGFVAFR 433
Score = 32.7 bits (71), Expect = 0.042
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 167 DHNSAEAPGR--DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 295
+++ PG+ D+ ++VG + +D+E+ HF YG++ SI
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.9 bits (74), Expect = 0.018
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 212 LFVGGLSWETTDKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVF 352
+FVG LS + ++ F + Y S + TDP T SRG+ F+ F
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 28.7 bits (61), Expect = 0.69
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 212 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTG 322
+FVGGLS +++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 422 PKXAKARHGKIFVGGLXSEISHDEIRNFF 508
P+ A + +FVGGL +S +E++ F
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLF 323
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 33.1 bits (72), Expect = 0.032
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +2
Query: 212 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKA-PXSIXKVMAA 388
LFVG L ++ L D F A G++ GRS+G+ F+ + + + + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 389 GEHTINNXKVXPKXAKARHGK 451
+ N + A R GK
Sbjct: 161 NNQFLMNKPITVSYAFKREGK 181
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 31.9 bits (69), Expect = 0.074
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 200 DDRKLFVGGLSWETTDKELRDHF-GAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 361
++ K+ V L + T+ ++++ F + G +++ PN GRS+G A I+F P
Sbjct: 53 EESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 31.5 bits (68), Expect = 0.097
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 516 FGTILXVEMPFDKTKNQXKGFCFITF 593
FG + V MP DK N KGF +I F
Sbjct: 346 FGQLEQVHMPIDKKTNNPKGFAYIDF 371
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 31.5 bits (68), Expect = 0.097
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 212 LFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 352
++VG LS+ TT++++ F GEI I + D T GF F+ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 31.5 bits (68), Expect = 0.097
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 203 DRKLFVGGLSWETTDKELRDHFGAYGEIXSINV--KTDPNTGRSRGFAFIVFK 355
+++++VGGLS +L F +G + ++ + K+ P G + FA++ F+
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFR 55
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 31.1 bits (67), Expect = 0.13
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Frame = +2
Query: 158 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGR 325
D+ H SAE P + DD ++FVG LS T E+R F G + + +
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRG 83
Query: 326 SR----GFAFIVFKAPXSIXKVM 382
+R G AF+ F + K +
Sbjct: 84 TRLVPSGIAFVTFNNQEDVDKAI 106
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 30.3 bits (65), Expect = 0.22
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 248 KELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 361
++L + F +G I S + + P+T S+G+ F+ F P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.9 bits (64), Expect = 0.30
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 206 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 316
R +F+G L +KE+ + FG +G+I I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.7 bits (61), Expect = 0.69
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +2
Query: 197 DDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 361
D K+++ L + ++ + +G++ S + + G S+GF F FK P
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNP 361
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 206 RKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 316
R +F+G L T+ E+R+ +G I I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +2
Query: 173 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSINVKTDPN 316
N A A R +++G T + L++ F +GEI +N + N
Sbjct: 403 NIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 182 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIXSI 295
E P LF+ G+ E D ++R HF YG + S+
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSV 241
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 219 TKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVVIS 106
T SFL + R +L C S P +AF W+ ++ S
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICS 242
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 329 RGFAFIVFKAPXSIXKVMAAGEHTINNXK 415
RGFA IVF A S +V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 203 DRKLFVGGLSWETTDKELRDHFGAYGEI 286
+ +LFVG + + T +++ D F YG+I
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQI 30
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 510 AEFGTILXVEMPFDKTKNQXKGFCFITFES 599
++FG +L + M ++ K + FI FES
Sbjct: 126 SQFGPVLRLRMSRNRKTGSSKHYAFIEFES 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,031
Number of Sequences: 5004
Number of extensions: 43686
Number of successful extensions: 158
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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