Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O10
         (392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207           35   0.027
05_01_0024 - 164618-165139,166884-166949,167046-167216,167321-16...    29   1.0  
02_05_0389 + 28551649-28551903,28552328-28552402,28552482-285526...    29   1.0  
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632...    28   2.3  
02_04_0278 - 21507288-21507726,21507893-21507972,21508587-215088...    27   4.1  
02_05_0390 + 28557722-28557937,28558440-28558514,28558597-285587...    27   5.4  
02_03_0056 - 14525491-14525833,14525882-14526125,14526447-145265...    27   5.4  
01_06_0357 - 28668894-28669238,28669510-28669537,28669578-286696...    27   7.1  

>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
          Length = 153

 Score = 34.7 bits (76), Expect = 0.027
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 162 KKTGCLELHYKVQECIAETK-DWRKCQTAVNNFRDCINKHKQ 284
           K   C + +  V +C+  TK D++KC+T ++ + +C N  K+
Sbjct: 69  KDDPCCDTYSLVMKCLENTKNDFKKCKTLIDKYEECSNPPKE 110


>05_01_0024 -
           164618-165139,166884-166949,167046-167216,167321-167422,
           167538-167600,167679-167825,168234-168359,168742-168921,
           169183-169322,169688-169861,170096-170123
          Length = 572

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 168 TGCLELHYKVQEC-IAETKDWRKCQTAVNNFRDCINKHKQEETTK 299
           T C E     ++C ++  +D  KC  AV  F  C+   +Q   TK
Sbjct: 525 TPCTEERSNCRQCYVSNAQDPLKCAEAVKRFEACVRLARQRGNTK 569


>02_05_0389 +
           28551649-28551903,28552328-28552402,28552482-28552605,
           28552692-28552978,28553147-28553482,28553813-28553869,
           28554156-28554382,28554465-28554627,28554912-28554938
          Length = 516

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +3

Query: 57  PKKLILPLKRIS-YKNMTIKPREQIGSDDD------PVEGMLKKTGCLELHYKVQECIAE 215
           P++ I  LK ++   +M + PR Q+ S +       P E +LK+   ++    +QE + +
Sbjct: 351 PEEKIRILKGLTRMSSMRVGPRPQVVSPERQKLYSIPEEQLLKEKREIDELINIQEALRD 410

Query: 216 TKDWRKCQTAVNNFRDC 266
           +K   +C+ A++    C
Sbjct: 411 SKQCPRCKMAISKIEGC 427


>04_03_0278 -
           13761999-13762462,13762628-13762727,13763065-13763289,
           13763347-13763415,13763605-13764432,13764706-13764779,
           13818821-13818905
          Length = 614

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 213 RRCIPALYSVVPDSQFFSA 157
           +RCIP LYS+VP    F A
Sbjct: 436 KRCIPRLYSIVPMEHAFKA 454


>02_04_0278 -
           21507288-21507726,21507893-21507972,21508587-21508840,
           21508988-21509180
          Length = 321

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 172 PVFFSMPSTGSSSLPICSRGFIV 104
           P+F S   TGS++  +C+RGF V
Sbjct: 56  PLFVSSAETGSANSEMCTRGFDV 78


>02_05_0390 +
           28557722-28557937,28558440-28558514,28558597-28558766,
           28559046-28559124,28559320-28559516,28560300-28560387,
           28560453-28560679,28560763-28560919,28561467-28561517
          Length = 419

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 144 PVEGMLKKTGCLELHYKVQECIAETKDWRKCQTAVNNFRDC 266
           P E +LK+   LE    +QE +  +K    C+ A++    C
Sbjct: 284 PAEQLLKERRELEELMNIQEALRSSKQCPHCKMAISKIEGC 324


>02_03_0056 -
           14525491-14525833,14525882-14526125,14526447-14526591,
           14526757-14527121,14527323-14527722
          Length = 498

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 180 ELHYKVQECIAETKDWRKCQTAVNNFRDCINKHKQE 287
           E+HY + E IA+T++W+  Q A   F +  N  +Q+
Sbjct: 446 EIHYNLTEHIAQTQEWQ--QPANAQFANINNMMQQQ 479


>01_06_0357 -
           28668894-28669238,28669510-28669537,28669578-28669635,
           28669836-28669916,28670395-28670526,28670609-28670926,
           28672495-28673317
          Length = 594

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 168 FFSACLPRDHHHCRSVLEV 112
           FFS+C   DHH+ +  +EV
Sbjct: 292 FFSSCSSEDHHNSQGAVEV 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,362,690
Number of Sequences: 37544
Number of extensions: 136012
Number of successful extensions: 348
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)