Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O10
         (392 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47356-5|CAA87418.1|  173|Caenorhabditis elegans Hypothetical pr...    30   0.68 
AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical ...    28   2.1  
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p...    27   3.6  
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue...    27   3.6  
U53341-3|AAM69115.1|  608|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical pr...    26   8.4  

>Z47356-5|CAA87418.1|  173|Caenorhabditis elegans Hypothetical
           protein T15H9.5 protein.
          Length = 173

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 24/89 (26%), Positives = 38/89 (42%)
 Frame = +3

Query: 39  CCAIV*PKKLILPLKRISYKNMTIKPREQIGSDDDPVEGMLKKTGCLELHYKVQECIAET 218
           C   V P+K   P+K +S K +  K +E+    D+ VE  +KK    E+     E + + 
Sbjct: 61  CKKPVSPEKKKSPIKVLSEKKLKSKKKEEDKEPDEKVEKDVKK----EVKADNNEPLVKN 116

Query: 219 KDWRKCQTAVNNFRDCINKHKQEETTKNK 305
               K +    N +  +  HK E   K K
Sbjct: 117 LKIAKKEQEEENPKTDLESHKDEAEAKKK 145


>AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical
           protein C09E7.5 protein.
          Length = 496

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +3

Query: 132 SDDDPVEGMLKKTGCLELHYKVQECIAETKDWRKC---QTAVNNFRDCINKHKQEETTKN 302
           +D +  E +  K   +E  +K      +TK   +C   +T +NN +  + +  +EE  KN
Sbjct: 65  TDSNAAENLDNKENIIESTFKTAIDKEDTKSCSECTEFKTYMNNMKSVLEETLEEEKEKN 124

Query: 303 K 305
           K
Sbjct: 125 K 125


>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
            protein T04H1.4b protein.
          Length = 1312

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 189  YKVQECIAETK-DWRKCQTAVNNFRDCI 269
            Y+ Q+ IAE K   ++CQ A +N+RD I
Sbjct: 1069 YEKQKKIAEAKLSTKECQNAESNYRDAI 1096


>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
            T04H1.4a protein.
          Length = 1298

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 189  YKVQECIAETK-DWRKCQTAVNNFRDCI 269
            Y+ Q+ IAE K   ++CQ A +N+RD I
Sbjct: 1055 YEKQKKIAEAKLSTKECQNAESNYRDAI 1082


>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
            ceRAD50 protein.
          Length = 1298

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 189  YKVQECIAETK-DWRKCQTAVNNFRDCI 269
            Y+ Q+ IAE K   ++CQ A +N+RD I
Sbjct: 1055 YEKQKKIAEAKLSTKECQNAESNYRDAI 1082


>U53341-3|AAM69115.1|  608|Caenorhabditis elegans Hypothetical
           protein F49E10.4b protein.
          Length = 608

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +3

Query: 174 CLELHYKVQECIAETKDWRKC---QTAVNNFR 260
           CL +H  +Q+CI+ + D + C   +T++ NFR
Sbjct: 525 CLTIHQYIQKCISISWDIQCCPERKTSLKNFR 556


>Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical
           protein F25H2.7 protein.
          Length = 368

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 114 PREQIGSDDDPVEGMLKKTGCLELHYKVQECIAETKDWR 230
           P+   GSD+  +  ++ + G LEL  K+  C  E   W+
Sbjct: 197 PKSFHGSDNGAIHSVILRQGPLELKNKIDSC--ENNFWK 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,840,857
Number of Sequences: 27780
Number of extensions: 137199
Number of successful extensions: 428
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)