Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_O08
(313 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U66619-1|AAC50697.1| 469|Homo sapiens SWI/SNF complex 60 KDa su... 31 0.72
AC006011-2|AAX82033.1| 1336|Homo sapiens unknown protein. 30 1.3
AB044749-1|BAB32435.1| 1336|Homo sapiens WDC146 protein. 30 1.3
Y15635-1|CAA75729.1| 2273|Homo sapiens ABCR protein. 28 5.0
U88667-1|AAC51144.1| 2273|Homo sapiens ATP-binding cassette tran... 28 5.0
AF001945-1|AAC05632.1| 2273|Homo sapiens rim ABC transporter pro... 28 5.0
AF000148-1|AAC23915.1| 2273|Homo sapiens ATP-binding cassette tr... 28 5.0
AB210040-1|BAE06122.1| 2303|Homo sapiens ABCA4 variant protein p... 28 5.0
AK127619-1|BAC87060.1| 237|Homo sapiens protein ( Homo sapiens ... 28 6.7
DQ854812-1|ABI23978.1| 301|Homo sapiens visual system homeobox ... 27 8.8
DQ854811-1|ABI23977.1| 236|Homo sapiens visual system homeobox ... 27 8.8
DQ854810-1|ABI23976.1| 218|Homo sapiens visual system homeobox ... 27 8.8
DQ854809-1|ABI23975.1| 280|Homo sapiens visual system homeobox ... 27 8.8
DQ854808-1|ABI23974.1| 239|Homo sapiens visual system homeobox ... 27 8.8
DQ854807-1|ABI23973.1| 365|Homo sapiens visual system homeobox ... 27 8.8
BC126228-1|AAI26229.1| 365|Homo sapiens visual system homeobox ... 27 8.8
AL833931-1|CAD38787.1| 1016|Homo sapiens hypothetical protein pr... 27 8.8
AL080312-3|CAI18918.1| 365|Homo sapiens visual system homeobox ... 27 8.8
AF251034-1|AAF99657.1| 239|Homo sapiens homeodomain protein RIN... 27 8.8
AF251033-1|AAF99656.1| 365|Homo sapiens homeodomain protein RIN... 27 8.8
AF176797-1|AAF37425.2| 365|Homo sapiens transcription factor VS... 27 8.8
>U66619-1|AAC50697.1| 469|Homo sapiens SWI/SNF complex 60 KDa
subunit protein.
Length = 469
Score = 31.1 bits (67), Expect = 0.72
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +2
Query: 14 PTAARVXCSHLGRPRMPR-PRAQLAP----GWPPRAGEXP 118
P+ AR+ H GRP PR PR AP WPPR G P
Sbjct: 18 PSGARM--PHQGRPWAPRAPRTWAAPPCDPAWPPRDGARP 55
>AC006011-2|AAX82033.1| 1336|Homo sapiens unknown protein.
Length = 1336
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 111 SPARGGQPGASWARGRGMRGRP 46
+P+RGG+ G++W RG M P
Sbjct: 1302 TPSRGGRSGSNWGRGSNMNSGP 1323
>AB044749-1|BAB32435.1| 1336|Homo sapiens WDC146 protein.
Length = 1336
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 111 SPARGGQPGASWARGRGMRGRP 46
+P+RGG+ G++W RG M P
Sbjct: 1302 TPSRGGRSGSNWGRGSNMNSGP 1323
>Y15635-1|CAA75729.1| 2273|Homo sapiens ABCR protein.
Length = 2273
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 200 RDLISADRRDLXLVNSSLRCPVLVKXESF 286
RD+ + R L LVN L C VL K ES+
Sbjct: 500 RDIFNITDRTLRLVNQYLECLVLDKFESY 528
>U88667-1|AAC51144.1| 2273|Homo sapiens ATP-binding cassette
transporter protein.
Length = 2273
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 200 RDLISADRRDLXLVNSSLRCPVLVKXESF 286
RD+ + R L LVN L C VL K ES+
Sbjct: 500 RDIFNITDRTLRLVNQYLECLVLDKFESY 528
>AF001945-1|AAC05632.1| 2273|Homo sapiens rim ABC transporter
protein.
Length = 2273
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 200 RDLISADRRDLXLVNSSLRCPVLVKXESF 286
RD+ + R L LVN L C VL K ES+
Sbjct: 500 RDIFNITDRTLRLVNQYLECLVLDKFESY 528
>AF000148-1|AAC23915.1| 2273|Homo sapiens ATP-binding cassette
transporter protein.
Length = 2273
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 200 RDLISADRRDLXLVNSSLRCPVLVKXESF 286
RD+ + R L LVN L C VL K ES+
Sbjct: 500 RDIFNITDRTLRLVNQYLECLVLDKFESY 528
>AB210040-1|BAE06122.1| 2303|Homo sapiens ABCA4 variant protein
protein.
Length = 2303
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 200 RDLISADRRDLXLVNSSLRCPVLVKXESF 286
RD+ + R L LVN L C VL K ES+
Sbjct: 530 RDIFNITDRTLRLVNQYLECLVLDKFESY 558
>AK127619-1|BAC87060.1| 237|Homo sapiens protein ( Homo sapiens
cDNA FLJ45717 fis, clone FELNG2001613. ).
Length = 237
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 93 QPGASWARGRGMRGRPRWLHXTRAAVGALT 4
+P +WA+GRG RG R L + G+ T
Sbjct: 82 EPSLTWAQGRGCRGHFRSLPAAASRSGSRT 111
>DQ854812-1|ABI23978.1| 301|Homo sapiens visual system homeobox 1
transcript variant 6 protein.
Length = 301
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Frame = +2
Query: 14 PTAARVXCSHLGR-----PRMPRPRAQLAPGWPPRA 106
P AAR C L PR P P A LAP PP A
Sbjct: 93 PAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPA 128
>DQ854811-1|ABI23977.1| 236|Homo sapiens visual system homeobox 1
transcript variant 5 protein.
Length = 236
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Frame = +2
Query: 14 PTAARVXCSHLGR-----PRMPRPRAQLAPGWPPRA 106
P AAR C L PR P P A LAP PP A
Sbjct: 93 PAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPA 128
>DQ854810-1|ABI23976.1| 218|Homo sapiens visual system homeobox 1
transcript variant 4 protein.
Length = 218
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Frame = +2
Query: 14 PTAARVXCSHLGR-----PRMPRPRAQLAPGWPPRA 106
P AAR C L PR P P A LAP PP A
Sbjct: 93 PAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPA 128
>DQ854809-1|ABI23975.1| 280|Homo sapiens visual system homeobox 1
transcript variant 3 protein.
Length = 280
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Frame = +2
Query: 14 PTAARVXCSHLGR-----PRMPRPRAQLAPGWPPRA 106
P AAR C L PR P P A LAP PP A
Sbjct: 93 PAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPA 128
>DQ854808-1|ABI23974.1| 239|Homo sapiens visual system homeobox 1
transcript variant 2 protein.
Length = 239
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Frame = +2
Query: 14 PTAARVXCSHLGR-----PRMPRPRAQLAPGWPPRA 106
P AAR C L PR P P A LAP PP A
Sbjct: 93 PAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPA 128
>DQ854807-1|ABI23973.1| 365|Homo sapiens visual system homeobox 1
transcript variant 1 protein.
Length = 365
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Frame = +2
Query: 14 PTAARVXCSHLGR-----PRMPRPRAQLAPGWPPRA 106
P AAR C L PR P P A LAP PP A
Sbjct: 93 PAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPA 128
>BC126228-1|AAI26229.1| 365|Homo sapiens visual system homeobox 1
protein.
Length = 365
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Frame = +2
Query: 14 PTAARVXCSHLGR-----PRMPRPRAQLAPGWPPRA 106
P AAR C L PR P P A LAP PP A
Sbjct: 93 PAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPA 128
>AL833931-1|CAD38787.1| 1016|Homo sapiens hypothetical protein
protein.
Length = 1016
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -2
Query: 96 GQPGASWARGRGMRGRPRWL 37
G+P S AR RG RGRP WL
Sbjct: 21 GEPRPS-ARRRGRRGRPGWL 39
>AL080312-3|CAI18918.1| 365|Homo sapiens visual system homeobox 1
homolog, CHX10-like (zebrafish) protein.
Length = 365
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Frame = +2
Query: 14 PTAARVXCSHLGR-----PRMPRPRAQLAPGWPPRA 106
P AAR C L PR P P A LAP PP A
Sbjct: 93 PAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPA 128
>AF251034-1|AAF99657.1| 239|Homo sapiens homeodomain protein RINX,
S1 isoform protein.
Length = 239
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Frame = +2
Query: 14 PTAARVXCSHLGR-----PRMPRPRAQLAPGWPPRA 106
P AAR C L PR P P A LAP PP A
Sbjct: 93 PAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPA 128
>AF251033-1|AAF99656.1| 365|Homo sapiens homeodomain protein RINX,
L1 isoform protein.
Length = 365
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Frame = +2
Query: 14 PTAARVXCSHLGR-----PRMPRPRAQLAPGWPPRA 106
P AAR C L PR P P A LAP PP A
Sbjct: 93 PAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPA 128
>AF176797-1|AAF37425.2| 365|Homo sapiens transcription factor VSX1
protein.
Length = 365
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Frame = +2
Query: 14 PTAARVXCSHLGR-----PRMPRPRAQLAPGWPPRA 106
P AAR C L PR P P A LAP PP A
Sbjct: 93 PAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPA 128
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,813,318
Number of Sequences: 237096
Number of extensions: 518988
Number of successful extensions: 2143
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2143
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1459139350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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