Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O08
         (313 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80436-2|AAC71110.1|  928|Caenorhabditis elegans Uncoordinated p...    28   1.6  
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p...    28   1.6  
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle...    28   1.6  
Z68219-2|CAA92476.1|  300|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AF036699-4|AAB88358.1|  281|Caenorhabditis elegans Collagen prot...    26   6.4  
AF016687-1|AAC48094.2|  315|Caenorhabditis elegans Dumpy : short...    26   6.4  
AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    26   6.4  
AF016672-6|AAM34394.2|  165|Caenorhabditis elegans Vig (drosophi...    26   6.4  
Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical pr...    25   8.4  
AL032627-19|CAD66222.1|  309|Caenorhabditis elegans Hypothetical...    25   8.4  

>U80436-2|AAC71110.1|  928|Caenorhabditis elegans Uncoordinated
           protein 73, isoform c protein.
          Length = 928

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 185 LTRLHRDLISADRRDLXLV--NSSLRCPVLVKXESFTHLWIG 304
           LT   R ++  D +D+ +V  N    CP++     FT +W G
Sbjct: 739 LTTCERPVVVEDMKDIEVVEGNDVEMCPIISSHTDFTVIWHG 780


>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
            protein 73, isoform a protein.
          Length = 2488

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 185  LTRLHRDLISADRRDLXLV--NSSLRCPVLVKXESFTHLWIG 304
            LT   R ++  D +D+ +V  N    CP++     FT +W G
Sbjct: 2299 LTTCERPVVVEDMKDIEVVEGNDVEMCPIISSHTDFTVIWHG 2340


>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucleotide
            exchange factorUNC-73A protein.
          Length = 2488

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 185  LTRLHRDLISADRRDLXLV--NSSLRCPVLVKXESFTHLWIG 304
            LT   R ++  D +D+ +V  N    CP++     FT +W G
Sbjct: 2299 LTTCERPVVVEDMKDIEVVEGNDVEMCPIISSHTDFTVIWHG 2340


>Z68219-2|CAA92476.1|  300|Caenorhabditis elegans Hypothetical
           protein T05A1.2 protein.
          Length = 300

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 47  GRPRMP-RPRAQLAPGWPPRAGEXPC 121
           GRP  P RP A  APG P +  + PC
Sbjct: 113 GRPGTPGRPGAPGAPGHPGKPPQSPC 138


>Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical
           protein F14F7.1 protein.
          Length = 305

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +2

Query: 47  GRPRMP-RPRAQLAPGWPPRAGEXPCH 124
           G+P  P  P A   PG P + G  PCH
Sbjct: 116 GKPGRPGAPGAWGMPGNPGKGGSGPCH 142


>AF036699-4|AAB88358.1|  281|Caenorhabditis elegans Collagen protein
           104 protein.
          Length = 281

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 120 HGXSPARGGQPGASWARGR-GMRGRPRWLHXTRAAVG 13
           H  +P  GG+PGA    G  G +GR    H T+ A G
Sbjct: 173 HPGNPGYGGEPGAPGNNGEPGDKGRD-GSHGTKGAPG 208


>AF016687-1|AAC48094.2|  315|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 9 protein.
          Length = 315

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = -2

Query: 120 HGXSPARGGQPGASWARG-RGMRGRP 46
           H   P  GGQPG   A G RG  G P
Sbjct: 228 HDGKPGLGGQPGVRGAVGARGDAGNP 253


>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 108 PARGGQPGASWARGRGMRG 52
           P RGG+ GA+   GRG RG
Sbjct: 108 PRRGGERGAARPAGRGGRG 126


>AF016672-6|AAM34394.2|  165|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform b
           protein.
          Length = 165

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 108 PARGGQPGASWARGRGMRG 52
           P RGG+ GA+   GRG RG
Sbjct: 48  PRRGGERGAARPAGRGGRG 66


>Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.6 protein.
          Length = 316

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 111 SPARGGQPGASWARGRGMRG 52
           +P   G PG S  RGRG+ G
Sbjct: 188 APGNPGSPGKSGQRGRGLPG 207


>Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.5 protein.
          Length = 316

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 111 SPARGGQPGASWARGRGMRG 52
           +P   G PG S  RGRG+ G
Sbjct: 188 APGNPGSPGKSGQRGRGLPG 207


>AL032627-19|CAD66222.1|  309|Caenorhabditis elegans Hypothetical
           protein Y41C4A.16 protein.
          Length = 309

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +2

Query: 47  GRPRMP-RPRAQLAPGWPPRAGEXPCH 124
           G+P  P RP A   PG P R    PCH
Sbjct: 122 GKPGRPGRPGAGGLPGNPGRPPAQPCH 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,242,907
Number of Sequences: 27780
Number of extensions: 67743
Number of successful extensions: 240
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)