Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O04
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    62   9e-11
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    27   2.3  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.1  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   4.1  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    26   5.4  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   7.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.4  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   9.4  

>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 61.7 bits (143), Expect = 9e-11
 Identities = 26/57 (45%), Positives = 35/57 (61%)
 Frame = +3

Query: 477 EMSDKEFNKTYKRPKPNQDTELIFYCMVGRRSAKAQESAINLGFKNTKNYQXSWTEW 647
           ++SD+EF+KTY   KP  +  ++ YC  GRRS  A +    LG+KN  NY  SW EW
Sbjct: 108 KLSDEEFSKTYGFSKPVFEDNVVVYCRSGRRSTTASDILTKLGYKNIGNYTGSWLEW 164



 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 338 YDEVXKAISNNNILLIDVRXPDEVKEHGHIPNXINIPL 451
           Y+   +   + + +LIDVR PDE K+ G I    N+P+
Sbjct: 64  YNLSKRPTGDKSTVLIDVREPDEFKQ-GAIETSYNLPV 100


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 184 IRKSRTTSAGYLKLNYARKQLSSNEYKAIPQLNALSLQIVFRV 312
           I+    +   +L L+Y    L+SNEY A  Q  A   Q+ F +
Sbjct: 135 IKSKYLSKETFLNLDYIDNHLASNEYFAGEQFTAADPQMCFPI 177


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 42   VLYVYSSYDININVITIKAYFNFIHF 119
            VL   +S ++N+NV+T + +F F+ F
Sbjct: 1171 VLKKITSMEVNLNVLTRELHFKFVSF 1196


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 447  GIFIXFGICPCSFTSSGXLT 388
            GI++ FG   C+F SS  LT
Sbjct: 947  GIYLFFGFLSCAFISSSSLT 966


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 311 LKVETKVADYDEVXKAISNNNILLIDVRXPDEVKE 415
           L+ + + AD + +  A   +  LLIDV  PD++ E
Sbjct: 520 LEQQKRKADAEAIANAQPGSEPLLIDVVGPDQINE 554


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 105 NFIHFIKRNCITTRHVSLWTSHNTVNNTKVS 197
           NF+ +++ +C+ T  VSL  S N  N+  ++
Sbjct: 335 NFLLYLENSCVITYDVSLDCSFNEYNDPLIT 365


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +3

Query: 456 TISTVLGEMSDKEFNKTYKRPKPNQDTELIFYCMVGRRSAKAQESAIN 599
           TI++   E+   E    +   K   + E+  +C  G   + ++E AIN
Sbjct: 406 TITSAPDEVEQDEAKSFHSSAKFQTEKEITDFCQKGVEESASEEEAIN 453


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 15   SSRDFLGRTVLYVYSSY--DININVITIKAYF 104
            S +DFL  TV Y+YS Y  D  + +++    F
Sbjct: 1808 SIKDFLKHTVSYLYSYYFEDYELEIVSTLTMF 1839


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 251 RMNIKQSHS*TLYPCRLYSELKVETKVADYDEVXKAISNNN 373
           R++   S++ TL     +SEL + T   DYDE+    S N+
Sbjct: 326 RISSGSSYASTLRKVYDFSELSLPTNGKDYDELYLQSSRNS 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,732
Number of Sequences: 5004
Number of extensions: 41828
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)