Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O04
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293     29   3.2  
09_06_0043 + 20448793-20449823,20449915-20450030,20450491-204506...    28   5.6  
02_04_0465 - 23146332-23146367,23146786-23146858,23147200-231472...    28   5.6  
06_02_0347 - 14926801-14926821,14927615-14928529,14928530-149286...    28   7.4  
01_06_0082 + 26279699-26279996,26280100-26280315,26280438-262808...    28   7.4  
01_01_0689 - 5287110-5287209,5287444-5287691,5287935-5288107,528...    27   9.7  

>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
          Length = 352

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 184 IRKSRTTSAGYLKLNYARKQLSSNEYKAIPQLNALSLQIVF 306
           +R +R T+AGY K     K++ + +  A P+L  +   +VF
Sbjct: 91  VRTNRATNAGYWKTTGKDKEIFTGQPPATPELVGMKKTLVF 131


>09_06_0043 +
           20448793-20449823,20449915-20450030,20450491-20450661,
           20450761-20450807,20451090-20451182,20451571-20451709,
           20452028-20452130,20452749-20452866
          Length = 605

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +2

Query: 296 RLYSELKVETKVADYD--EVXKAISNNNILLIDVRXPDEVKEHGHIPNXINIPLAYNINC 469
           ++  ++ VE +V   D  E  +    NN  ++DVR   + KE  H P  +N+ + Y +  
Sbjct: 445 KIKRQVLVEKRVRSVDVKEALRLQKENNFAILDVRPVADFKE-AHPPGAVNVQI-YRLIK 502

Query: 470 TW 475
            W
Sbjct: 503 EW 504


>02_04_0465 -
           23146332-23146367,23146786-23146858,23147200-23147267,
           23147588-23147675,23147845-23147932,23148439-23148535,
           23148645-23148752,23148916-23149032,23149132-23149260
          Length = 267

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 519 KPNQDTELIFYCMVGRRSAKAQESAINLGFKN 614
           K ++DT++I  C  G RS  A E     GF+N
Sbjct: 164 KFSKDTDIIVVCQKGLRSLAACEQLYGAGFQN 195


>06_02_0347 -
           14926801-14926821,14927615-14928529,14928530-14928634,
           14928698-14929003
          Length = 448

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +3

Query: 459 ISTVLGEMSDKEFNKTYKRPKPNQDTELIFYCMVGRRSAKAQESAINLGFKN 614
           ++ ++ ++   + N  ++ P PN+D ++     VGRR A         GF N
Sbjct: 1   MNDLVQQLQTLQLNMPHREPPPNEDDDIEEEDEVGRRPAGRGRGGRGRGFAN 52


>01_06_0082 +
           26279699-26279996,26280100-26280315,26280438-26280863,
           26280966-26281168
          Length = 380

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 468 VLGEMSDKEFNKTYKRPKPNQDTELIFYCMVGRRSAKAQESAINLGFK 611
           V+GE+   ++N  +   +P +        ++GR  A  QE  INLG K
Sbjct: 184 VMGEIGGNDYNFWFTARQPRETARQYLPDVIGRIGAAVQE-VINLGAK 230


>01_01_0689 -
           5287110-5287209,5287444-5287691,5287935-5288107,
           5288913-5289060,5289537-5289696,5290021-5290166,
           5290963-5291191,5291901-5292123,5292253-5292401,
           5293501-5293670,5294188-5294259,5294363-5294443,
           5296180-5296311,5296381-5296468,5296841-5297054,
           5297501-5297684,5298069-5298152,5299002-5299131,
           5299280-5299650,5299684-5299967,5300932-5301247
          Length = 1233

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 304 IQSAGIKRSTVGLLYIHSMIIVFVHSSTSNSPRK*FETFVLLTVLC 167
           + +   K+S  G+  ++S  IV    STSN PR+   +  L+T+LC
Sbjct: 685 VSARNAKKSLSGVQSVNSFEIV----STSNRPRRTLTSRFLITLLC 726


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,421,067
Number of Sequences: 37544
Number of extensions: 216937
Number of successful extensions: 439
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)