Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O02
         (667 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    28   0.060
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   3.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.9  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   9.1  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 0.060
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 65  SAVYIFVHIQFFFILVCCD 121
           S +Y F HI FFF  +CCD
Sbjct: 66  SYMYAFTHI-FFFFAICCD 83


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 40  KFHKLFSTFSCLYFCSHSIFLYFG 111
           K H+L     C+Y  S S+ L  G
Sbjct: 24  KHHRLEKLVPCVYLTSFSVVLSLG 47


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 509 TTNYCQHGATATQSGLQYE 565
           +TN C++ AT  Q+  QY+
Sbjct: 104 STNPCENQATCVQNKNQYQ 122


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 447 ELLXARFLGAKMSAGSQIXMAPQTTVN 527
           ELL A F    M A   I +A   TVN
Sbjct: 253 ELLIAAFSHRSMQAQDAIVLATGLTVN 279


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,037
Number of Sequences: 336
Number of extensions: 3236
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)