Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O02
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    29   0.80 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   3.2  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    25   7.4  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   9.8  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    25   9.8  

>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = -1

Query: 376 RNLSWYSQNMDEISP*EQSHLWSNFKIKSHITSLECITIFFSFSSAEYENGDEIYLNCQC 197
           +N+ W S  +D++   ++SH +S      H+TSL    I        Y +G  I      
Sbjct: 585 KNVYWISGLLDQLEDFKRSHSFSPCYFSPHLTSLSADYIIPLSDLVAYGDGSRIENELYS 644

Query: 196 FPISHE 179
           F +  +
Sbjct: 645 FSVKQK 650


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 43  FHKLFSTFSCLYFCSHSIFLYFGLL*YLVNXXFCSXGL-QFCSLKK 177
           F+ +F+ + C  FC   +    GLL YL+    C+  L  +  LK+
Sbjct: 326 FNSVFAGY-CTIFCDEEVLKTPGLLAYLITKYRCTYSLFDYAGLKQ 370


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +1

Query: 307 LTTNGTVLKEKFHPYFDCTMTSFFNLMSEVLASRWSTSR 423
           + T      +KF  YFD  M   FN++ +     + T R
Sbjct: 520 IATVADAAAKKFEKYFDAIMPLLFNVLQQADGKEFRTLR 558


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 189 IGKH*QFKYISSPFSYSADEKLKKIVIHSSEVICDF 296
           + K+ +  Y  S F +   EKLK++ +   E IC F
Sbjct: 56  VKKNMEALYRQSSFGWDDSEKLKEMEMEKLEYICIF 91


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 465 FLGAKMSAGSQIXMAPQTTVNTG-QPLHSQDSNMSTGSSHSDKXVDALTPEKSVXMRGST 641
           FLG   S  S     P T+++     +H+  +  S+ SS S       +   S    GST
Sbjct: 496 FLGTATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSRSGSSSSSS-SRSGST 554

Query: 642 AASGT 656
           ++SG+
Sbjct: 555 SSSGS 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,651
Number of Sequences: 5004
Number of extensions: 47896
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)