Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O02
         (667 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF181637-1|AAD55423.1| 1266|Drosophila melanogaster BcDNA.GH0791...    47   3e-05
BT030440-1|ABO52860.1| 1378|Drosophila melanogaster LD40879p pro...    31   1.4  
BT029136-1|ABJ17069.1| 1196|Drosophila melanogaster LD14750p pro...    31   1.4  
BT025041-1|ABE73212.1| 1255|Drosophila melanogaster LD15160p pro...    31   1.4  
BT024217-1|ABC86279.1| 1373|Drosophila melanogaster RE19210p pro...    31   1.4  
AE014298-554|AAS72337.3| 1254|Drosophila melanogaster CG32782-PD...    31   1.4  
AE014298-553|AAN09104.4| 1254|Drosophila melanogaster CG32782-PC...    31   1.4  
AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein ...    29   4.3  

>AF181637-1|AAD55423.1| 1266|Drosophila melanogaster BcDNA.GH07910
           protein.
          Length = 1266

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = +3

Query: 408 MEHFQAALDPRKQELLXARFLGAKMSAGSQIXMAPQTTVNTGQ 536
           M+ FQ +L+PRK ELL +R  G +MS G+ + M+PQ T +  Q
Sbjct: 1   MDQFQTSLNPRKLELLESRITGVRMSPGAHLQMSPQNTSSLSQ 43



 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +3

Query: 552 DSNMSTGSSHSDKXVD 599
           DSNMSTGSSHS+K V+
Sbjct: 143 DSNMSTGSSHSEKDVN 158


>BT030440-1|ABO52860.1| 1378|Drosophila melanogaster LD40879p
           protein.
          Length = 1378

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +3

Query: 552 DSNMSTGSSHSDKXVD 599
           DSNMSTGSSHS+K V+
Sbjct: 366 DSNMSTGSSHSEKDVN 381


>BT029136-1|ABJ17069.1| 1196|Drosophila melanogaster LD14750p
           protein.
          Length = 1196

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +3

Query: 552 DSNMSTGSSHSDKXVD 599
           DSNMSTGSSHS+K V+
Sbjct: 184 DSNMSTGSSHSEKDVN 199


>BT025041-1|ABE73212.1| 1255|Drosophila melanogaster LD15160p
           protein.
          Length = 1255

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +3

Query: 552 DSNMSTGSSHSDKXVD 599
           DSNMSTGSSHS+K V+
Sbjct: 132 DSNMSTGSSHSEKDVN 147


>BT024217-1|ABC86279.1| 1373|Drosophila melanogaster RE19210p
           protein.
          Length = 1373

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +3

Query: 552 DSNMSTGSSHSDKXVD 599
           DSNMSTGSSHS+K V+
Sbjct: 250 DSNMSTGSSHSEKDVN 265


>AE014298-554|AAS72337.3| 1254|Drosophila melanogaster CG32782-PD,
           isoform D protein.
          Length = 1254

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +3

Query: 552 DSNMSTGSSHSDKXVD 599
           DSNMSTGSSHS+K V+
Sbjct: 131 DSNMSTGSSHSEKDVN 146


>AE014298-553|AAN09104.4| 1254|Drosophila melanogaster CG32782-PC,
           isoform C protein.
          Length = 1254

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +3

Query: 552 DSNMSTGSSHSDKXVD 599
           DSNMSTGSSHS+K V+
Sbjct: 131 DSNMSTGSSHSEKDVN 146


>AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein
           protein.
          Length = 1006

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = +1

Query: 319 GTVLKEKFHP--YFDCTM----TSFFNLMSEVLASRWSTSRRRWILASRSFSKHDS*EPK 480
           G VL +  HP  Y   T+    T++  +  E+LA  W+T   R  L  R F      +P 
Sbjct: 468 GAVLSQDGHPISYISRTLNDHETNYSTIEKELLAIVWATKTFRHYLLGRHFEIASDHQPL 527

Query: 481 CQLVHK 498
           C L HK
Sbjct: 528 CWL-HK 532


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,240,796
Number of Sequences: 53049
Number of extensions: 494977
Number of successful extensions: 1090
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2868730650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)