Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O02
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical p...    28   5.2  
AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical ...    28   5.2  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    28   6.8  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    28   6.8  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    28   6.8  
AF047652-5|AAC04391.2|  449|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
            protein F40G12.3 protein.
          Length = 1099

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = +3

Query: 471  GAKMSAGSQIXMAPQTTVNTGQPLHSQDSNMSTGSSHSDKXVDALTPEKSVXMRGSTAAS 650
            G K +  S   ++P+TTVNTG+   ++ ++ ++G + +   V +     +V +  +T   
Sbjct: 945  GTKTANSSVAELSPRTTVNTGESATTKATSPTSGGNTTTISVQSANATVAVTLTTNTTTQ 1004

Query: 651  GT 656
             T
Sbjct: 1005 TT 1006


>Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 301 KIKSHITSLECITIFFSFSSAEYENGDEIYLNCQCFPISHEFSLNYKI 158
           +I +   ++E   +F      EY+NG+E+Y     FP  HE   +Y +
Sbjct: 564 EISNDTNNVEPHEVFGETEHVEYKNGEELYRKIWYFP--HEVHTSYDL 609


>AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 301 KIKSHITSLECITIFFSFSSAEYENGDEIYLNCQCFPISHEFSLNYKI 158
           +I +   ++E   +F      EY+NG+E+Y     FP  HE   +Y +
Sbjct: 564 EISNDTNNVEPHEVFGETEHVEYKNGEELYRKIWYFP--HEVHTSYDL 609


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 44   FTNFFLLSAVYIFVHIQFFFILVCC 118
            F NF+L  A YIFV +  F ++V C
Sbjct: 954  FNNFYLQIAEYIFVLVMSFELIVKC 978


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 44   FTNFFLLSAVYIFVHIQFFFILVCC 118
            F NF+L  A YIFV +  F ++V C
Sbjct: 932  FNNFYLQIAEYIFVLVMSFELIVKC 956


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 44   FTNFFLLSAVYIFVHIQFFFILVCC 118
            F NF+L  A YIFV +  F ++V C
Sbjct: 954  FNNFYLQIAEYIFVLVMSFELIVKC 978


>AF047652-5|AAC04391.2|  449|Caenorhabditis elegans Hypothetical
           protein C34H4.2 protein.
          Length = 449

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +3

Query: 516 TTVNTGQPLHSQDSNMSTGSSHSDKXVDALTPEKSVXMRGSTAASGTV 659
           TT ++  P     S   TG+S S     A  P  S+  + ST  SGT+
Sbjct: 374 TTPSSAPPAPGSSSASPTGTSGSSVSPPASGPTTSMPAQASTTPSGTM 421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,065,190
Number of Sequences: 27780
Number of extensions: 276275
Number of successful extensions: 803
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)