Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O01
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   3.5  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    26   3.5  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   8.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   8.1  
SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subu...    25   8.1  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    25   8.1  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 184 AAEPEEF-QDSGEDWTPDADSNEPASRTGRKRVSKAPVN 297
           + + EEF +DS      + D+NEP+++   K V +  VN
Sbjct: 237 STDSEEFSEDSDNSSEENKDTNEPSTKDAEKTVPEDVVN 275


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 181 RAAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKRK 318
           + A+ ++  D+    TP ADS EP      K V+ A   +++K  K
Sbjct: 342 KVADEKQLPDASSQATP-ADSKEPRKEEAEKPVTSATEVSSEKVEK 386


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -1

Query: 527  SIPF-TXDFSKTKFPEWKCFGTS 462
            + PF T   +KTK P W  FG S
Sbjct: 975  AFPFITTPIAKTKTPRWSSFGIS 997


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 179  AGPLNQKNFRTLVKIGRRTPIRTNLHLVLAEN 274
            + PL QKN+R   +    T ++T +  V+AEN
Sbjct: 1203 SNPLFQKNYRWQTQFYAATCLKTCISEVMAEN 1234


>SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subunit
           Tfg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 241

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 202 FQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTK 306
           + D GE+   D   NE     G+K+    PV+  K
Sbjct: 143 YSDEGEEARKDKRKNESEVGAGKKKAKAKPVDMDK 177


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 232 DADSNEPASRTGRKRVSKAPVNNTKK 309
           D D N   S + R   S APVNN+++
Sbjct: 344 DVDENISTSSSPRSPASLAPVNNSER 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,164
Number of Sequences: 5004
Number of extensions: 37437
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)