Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O01
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157...    29   2.0  
12_02_0454 + 19199063-19200757,19202201-19202287                       28   4.7  
07_01_0230 - 1679165-1681108                                           28   4.7  
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936...    27   8.2  
04_04_0260 + 23996775-23996865,23997031-23997566,23998407-239988...    27   8.2  
01_03_0207 - 13790801-13792057                                         27   8.2  

>04_04_0411 -
           25014511-25015015,25015098-25015169,25015700-25015734,
           25015805-25015873,25015993-25016044,25016444-25016526,
           25016625-25016726,25017150-25017884,25017962-25018012,
           25018792-25018983,25019066-25019216,25020012-25020193,
           25020329-25020532,25020752-25020859
          Length = 846

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +1

Query: 190 EPEEFQDSGEDWTPDADSNEPASRTGR 270
           E  EF D G D  PDA S+ P  R GR
Sbjct: 636 EKWEFIDEGRDNNPDASSDMPHGRRGR 662


>12_02_0454 + 19199063-19200757,19202201-19202287
          Length = 593

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
 Frame = +1

Query: 172 GQGRAAE--PEEF-----QDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKRK 318
           GQGR +E  PEE      ++  +D      SNE ++   ++   K    NTKK +K
Sbjct: 488 GQGRKSENQPEESRHNNDENGADDKMEGPSSNEDSAAASKEDQQKGKTGNTKKNKK 543


>07_01_0230 - 1679165-1681108
          Length = 647

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 295 SPVPLIHVFCQYEMQVRSNRRPASN-LHQSPEILL 194
           SP+  ++ F  + ++V   RRP +N  H SP IL+
Sbjct: 506 SPLTDVYAFAIFVLEVTCGRRPINNYTHDSPTILV 540


>04_04_0640 -
           26891552-26891725,26891814-26892326,26892698-26893644,
           26893778-26894114,26894413-26894462,26895020-26895248
          Length = 749

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 238 RRPASNLHQSPEILLVQRPCPDPSESSS 155
           RRPA +   +  +LL  RP P PS +SS
Sbjct: 16  RRPAVSAASASRLLLGHRPFPAPSPASS 43


>04_04_0260 +
           23996775-23996865,23997031-23997566,23998407-23998892,
           23998989-23999152,23999220-23999281,23999753-23999907,
           24000625-24000738,24001701-24002233,24002512-24002609,
           24003108-24003398,24003764-24003830,24003905-24003983
          Length = 891

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +1

Query: 184 AAEPEEFQDSGEDWT--PDADSNEPASRTGRKRV-SKAPVNNTKKKRK 318
           AAE E+  D G+D     D ++ E ASRT R  V +  P +   +K+K
Sbjct: 839 AAEDEDGDDDGDDMADKDDKETREIASRTKRLSVEAVGPSSFASRKKK 886


>01_03_0207 - 13790801-13792057
          Length = 418

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 328 MMSFYVSFWCCSPVPLIHVFCQYEMQVRSNRRPAS-NLHQSPEILLV 191
           ++ FYV  +C   +PLI V  +Y   +  NRR AS ++   P +LLV
Sbjct: 362 VIMFYVLIYCVCFLPLIGV--EYRPGMSVNRRKASISIQLRPIMLLV 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,234,899
Number of Sequences: 37544
Number of extensions: 237555
Number of successful extensions: 646
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)