Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_O01
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-8|CAB60959.1|  297|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z81557-4|CAB04537.1|  331|Caenorhabditis elegans Hypothetical pr...    28   5.6  
L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>AL132898-8|CAB60959.1|  297|Caenorhabditis elegans Hypothetical
           protein Y59A8B.11 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 168 PNLLRLTLKIYVXSFSLWVLYEKSTIARXD 79
           P + R+ L I+   F +W+L  KST+   D
Sbjct: 40  PGIKRVVLNIHHSQFQMWLLDAKSTVIHYD 69


>Z81557-4|CAB04537.1|  331|Caenorhabditis elegans Hypothetical
           protein F59A1.9 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = -2

Query: 259 EMQVRSNRRPASNLHQSPEILL--VQRPCPDPSESSSFNFKDLRFXIFFMGI---VRKKY 95
           +M  +   R  +NL     ++L  V RP     + S+FNF+ ++F I    +    +KKY
Sbjct: 79  DMSAQITHRIVNNLDHFERLVLRNVSRPLRHVIDHSNFNFEQIKFDIGEYSLRTSFKKKY 138

Query: 94  D 92
           D
Sbjct: 139 D 139


>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical protein
            F54F2.1 protein.
          Length = 1226

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 193  PEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKK 312
            P++ +  G+D+  + D  E   R G KRV + P    KKK
Sbjct: 987  PDDQEYDGDDFEEEDD--EDFDRAGSKRVKRNPTPKKKKK 1024


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,529,374
Number of Sequences: 27780
Number of extensions: 208016
Number of successful extensions: 658
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)