Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_N24
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 107 6e-25
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 103 1e-23
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 102 3e-23
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 42 6e-05
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 40 2e-04
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 39 3e-04
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 31 0.084
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.4
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 1.4
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 3.1
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 4.2
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 4.2
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 4.2
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 25 5.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.3
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 25 7.3
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 24 9.6
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 24 9.6
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 24 9.6
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 107 bits (258), Expect = 6e-25
Identities = 52/106 (49%), Positives = 71/106 (66%)
Frame = +3
Query: 69 YLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMP 248
YLL +GGK +P+A+D+E +LS+VGIEA+ E+++ +I ELNGKD+++LIAAG EKL+++P
Sbjct: 7 YLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVP 66
Query: 249 VGGGXXXXXXXXXXXXXXXEEXKEDKKXXXKEXSESDDDMGFGLFD 386
GG E E K KE ESD+DMGFGLFD
Sbjct: 67 TGGAASAAPAAAAGGAAPAAE--EAAKEEAKEEEESDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 103 bits (247), Expect = 1e-23
Identities = 50/106 (47%), Positives = 71/106 (66%)
Frame = +3
Query: 69 YLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMP 248
YLL +GGK +P+A+D+E +LS+VGIE++ E+++ +I EL+GKD+++LIAAG EKL+++P
Sbjct: 7 YLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVP 66
Query: 249 VGGGXXXXXXXXXXXXXXXEEXKEDKKXXXKEXSESDDDMGFGLFD 386
GG E E K KE ESD+DMGFGLFD
Sbjct: 67 SGGAAAAAAPAAAGGAAPAAE--EAAKEEAKEEEESDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 102 bits (244), Expect = 3e-23
Identities = 50/106 (47%), Positives = 71/106 (66%)
Frame = +3
Query: 69 YLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMP 248
YLL +GGK +P+A+D+E +LS+VGIEA+ E+++ +I+ELNGK++E+LIAAG EKLS++P
Sbjct: 7 YLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVP 66
Query: 249 VGGGXXXXXXXXXXXXXXXEEXKEDKKXXXKEXSESDDDMGFGLFD 386
G +E K+ E ESD+DMGFGLFD
Sbjct: 67 SAGAVATPAAGGAAGAEATSAAEEAKEEEAAE--ESDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 41.5 bits (93), Expect = 6e-05
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 186 LNGKDVEQLIA-AGREKLSSMPVGGGXXXXXXXXXXXXXXXEEXKEDKKXXXKEXSESDD 362
L GKD+++L+ G +S P G E +E+KK KE ESD+
Sbjct: 50 LEGKDLKELLLNIGSAGAASAPTAAGAGAAAPA--------EAAEEEKKEEAKEEEESDE 101
Query: 363 DMGFGLFD 386
DMGFGLFD
Sbjct: 102 DMGFGLFD 109
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 39.5 bits (88), Expect = 2e-04
Identities = 24/67 (35%), Positives = 32/67 (47%)
Frame = +3
Query: 186 LNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXXXXXXXEEXKEDKKXXXKEXSESDDD 365
L GKD+++L+ + PV GG E ++K KE ESD+D
Sbjct: 50 LEGKDLKELLLNIGSGAGAAPVAGGAAAPAAADG-------EAPAEEKEEAKEEEESDED 102
Query: 366 MGFGLFD 386
MGFGLFD
Sbjct: 103 MGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 39.1 bits (87), Expect = 3e-04
Identities = 24/67 (35%), Positives = 33/67 (49%)
Frame = +3
Query: 186 LNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXXXXXXXEEXKEDKKXXXKEXSESDDD 365
L GKD+++L+ ++ P GG E E++K KE ESD+D
Sbjct: 50 LEGKDLKELLL-NIGSAAAAPAAGGAGAPAAAAGG-----EAAAEEQKEEAKEEEESDED 103
Query: 366 MGFGLFD 386
MGFGLFD
Sbjct: 104 MGFGLFD 110
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 31.1 bits (67), Expect = 0.084
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 339 KEXSESDDDMGFGLFD 386
+E ESD+DMGFGLFD
Sbjct: 297 EEEEESDEDMGFGLFD 312
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 1.4
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -2
Query: 187 SSVITFLSFSPSASIP--TELRIFSTSAAAGVVLPPSTAS 74
SSV T LS S S+SIP + STS ++ V+P S++S
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSS 47
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 1.4
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -2
Query: 259 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSP----SASIPTELRIFSTSAAAGVVL 92
PPP SFS I+ ++ +P SS T + SP S+ +P+ + I S S ++ VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245
Query: 91 PPS 83
P S
Sbjct: 246 PTS 248
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 3.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 217 AISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAS 74
++S S+ L S++ T S +AS+PT I S S P+T+S
Sbjct: 79 SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -2
Query: 235 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTA 77
SF P+A + S P+SS+ +F + S +++ P+ + S A P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 4.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 385 TKLYKSTRRWSLFQFMF 435
TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 4.2
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Frame = -2
Query: 256 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVV 95
PPTG S S P + STS+P+ T + + S+ +PT STS
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTS 234
Query: 94 LPPSTASK*RGHVTHFLXP 38
+P +S +T + P
Sbjct: 235 IPTGGSSSLSTPITPTVPP 253
Score = 24.2 bits (50), Expect = 9.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 223 PAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPS 83
P + STS+P+ T + + S+ +PT STS +PP+
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTSIPPT 294
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 4.2
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -2
Query: 202 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTA 77
T LP ++V T SFS SAS T +++ +V PPST+
Sbjct: 37 TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTS 76
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.0 bits (52), Expect = 5.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 202 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAS 74
+ L + S T +S S S+PT+ + T + + V PPS S
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQS 568
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 7.3
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -2
Query: 253 PTGIDDSFSRPAAISCSTSLPLSS---VITFLSFSPSASIPTELRIFSTSAAAGVVLPPS 83
PT S+ +++ S+S P SS +T S S S+ T STS++ S
Sbjct: 202 PTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS 261
Query: 82 TAS 74
TAS
Sbjct: 262 TAS 264
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -2
Query: 139 TELRIFSTSAAAGVVLPPSTASK*RGHVTHFL 44
T + S G VLPP + + GH F+
Sbjct: 75 TATHVHGASGFEGAVLPPPSRKENEGHAVDFI 106
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 24.2 bits (50), Expect = 9.6
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -2
Query: 259 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSA-SIPTE-LRIFSTSAAAGVVLPP 86
PP + + F+RP +++ P SS T + S +A + T ++ +S++ +PP
Sbjct: 67 PPINCLAEPFNRPQPWHSNSAAPASSSPTSATLSTAAHPVHTNAAQVAGSSSSYVYSVPP 126
Query: 85 STASK*RGHVTHFLXPN 35
+ ++ + H P+
Sbjct: 127 TNSTTSQASAKHSAVPH 143
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 24.2 bits (50), Expect = 9.6
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = -2
Query: 229 SRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAS 74
S P+A+S +TS+P S+ + +S S S S T L S+S + V+ +T S
Sbjct: 139 SSPSAVSSTTSIP--SISSTISSSVSTSSFTSL---SSSGFSTVLSSTNTTS 185
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 84 LGGKTTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQ 209
L ++T + E+ + G+E+ G+K K ++ E NGK +++
Sbjct: 1335 LFNESTLRSGKAERFSENAGVESIGKKGKNLLNESGNGKKLDK 1377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,386,173
Number of Sequences: 5004
Number of extensions: 20387
Number of successful extensions: 102
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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