Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_N20
(416 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024776-21|AAK68479.1| 65|Caenorhabditis elegans Ribosomal pr... 81 4e-16
Z72511-4|CAA96660.1| 395|Caenorhabditis elegans Hypothetical pr... 29 1.0
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ... 28 3.1
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 27 4.1
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 27 4.1
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 27 4.1
Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z81128-1|CAB03398.1| 568|Caenorhabditis elegans Hypothetical pr... 27 7.2
U28929-1|AAN63410.1| 418|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF013953-1|AAC47750.1| 568|Caenorhabditis elegans mom-5 protein. 27 7.2
Z78546-7|CAB01772.1| 375|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 26 9.5
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 26 9.5
AL023830-4|CAA19474.1| 375|Caenorhabditis elegans Hypothetical ... 26 9.5
>AC024776-21|AAK68479.1| 65|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 28 protein.
Length = 65
Score = 80.6 bits (190), Expect = 4e-16
Identities = 41/54 (75%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
Frame = +1
Query: 73 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVKGPVRDGDILT 231
MDK LARV KV+GRTGSQGQCTQV+VEFI + +R IIRNVKGPVR+GDILT
Sbjct: 1 MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53
>Z72511-4|CAA96660.1| 395|Caenorhabditis elegans Hypothetical
protein F55A11.7 protein.
Length = 395
Score = 29.5 bits (63), Expect = 1.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 2 AFPKHASFGXTCVNCINARYYKPKW 76
+ P + G +CV C+N +Y P+W
Sbjct: 149 SLPYNLESGTSCVLCLNQKYQNPEW 173
>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
protein Y54E10A.11 protein.
Length = 1446
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 162 ELDLHLSTLALRTSTAEYFHDTSKNVGFIHF 70
++D H+ R S +EYF +T +N+ F
Sbjct: 505 DVDFHIIRNLARASNSEYFEETCRNINNFEF 535
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 145 EYTGPENQYGRVLSRHEQERWVYP 74
E TGPE+Q LS++E+ WVYP
Sbjct: 8246 EPTGPEDQK---LSKNEKGEWVYP 8266
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 145 EYTGPENQYGRVLSRHEQERWVYP 74
E TGPE+Q LS++E+ WVYP
Sbjct: 9290 EPTGPEDQK---LSKNEKGEWVYP 9310
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 145 EYTGPENQYGRVLSRHEQERWVYP 74
E TGPE+Q LS++E+ WVYP
Sbjct: 8291 EPTGPEDQK---LSKNEKGEWVYP 8311
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 145 EYTGPENQYGRVLSRHEQERWVYP 74
E TGPE+Q LS++E+ WVYP
Sbjct: 9335 EPTGPEDQK---LSKNEKGEWVYP 9355
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 145 EYTGPENQYGRVLSRHEQERWVYP 74
E TGPE+Q LS++E+ WVYP
Sbjct: 8291 EPTGPEDQK---LSKNEKGEWVYP 8311
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 145 EYTGPENQYGRVLSRHEQERWVYP 74
E TGPE+Q LS++E+ WVYP
Sbjct: 9335 EPTGPEDQK---LSKNEKGEWVYP 9355
>Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical
protein F09B12.2 protein.
Length = 295
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 14 HASFGXTCVNCINARYYKPKWIN 82
H SFG CV N RY+ IN
Sbjct: 132 HCSFGAVCVGHFNQRYFVAAVIN 154
>Z81128-1|CAB03398.1| 568|Caenorhabditis elegans Hypothetical
protein T23D8.1 protein.
Length = 568
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 295 VKAFTCTIYINLCVKLTKP-SKMTILLYSARNKYITXKKK 411
++ F CT+Y +C L KP L SA+N + KK
Sbjct: 86 IRLFLCTVYAPVCTVLEKPIQPCRELCLSAKNGCESLMKK 125
>U28929-1|AAN63410.1| 418|Caenorhabditis elegans Hypothetical
protein F09C12.2 protein.
Length = 418
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 145 QVKVEFIGETSRQIIRNVKGP-VRD 216
Q+ +E++G Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291
>AF013953-1|AAC47750.1| 568|Caenorhabditis elegans mom-5 protein.
Length = 568
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 295 VKAFTCTIYINLCVKLTKP-SKMTILLYSARNKYITXKKK 411
++ F CT+Y +C L KP L SA+N + KK
Sbjct: 86 IRLFLCTVYAPVCTVLEKPIQPCRELCLSAKNGCESLMKK 125
>Z78546-7|CAB01772.1| 375|Caenorhabditis elegans Hypothetical
protein T21H8.4 protein.
Length = 375
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 224 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 301
++ FLNL +K CD LL+ ++C ++R
Sbjct: 74 TNFFLNLMIKPSPCDLLLKTYFCSKIR 100
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 115 RVLSRHEQERWVYPFWLVISSVNTINTRATKAGV 14
R ++ ERW +P I + + +NT A AGV
Sbjct: 124 RSMTSFLSERWSFPVPYYIDTSSGVNTNAVLAGV 157
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 115 RVLSRHEQERWVYPFWLVISSVNTINTRATKAGV 14
R ++ ERW +P I + + +NT A AGV
Sbjct: 124 RSMTSFLSERWSFPVPYYIDTSSGVNTNAVLAGV 157
>AL023830-4|CAA19474.1| 375|Caenorhabditis elegans Hypothetical
protein T21H8.4 protein.
Length = 375
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 224 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 301
++ FLNL +K CD LL+ ++C ++R
Sbjct: 74 TNFFLNLMIKPSPCDLLLKTYFCSKIR 100
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,121,827
Number of Sequences: 27780
Number of extensions: 167948
Number of successful extensions: 404
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -