Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_N19
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...   173   1e-44
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   173   1e-44
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   5.5  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    25   9.5  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =  173 bits (422), Expect = 1e-44
 Identities = 88/158 (55%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
 Frame = +2

Query: 44  MTNSKGYXPRHQGTCSLAGSAHMELFRSPRYMKVYKVGDIVXIRGNGAVQKGMPHKVYHG 223
           M +S G   R + T       H ++ R   Y+K YKVGDIV I+ NGAVQKGMPHK YHG
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQI-RLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHG 59

Query: 224 KTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCXQDFLKXVKXNERLLKEA 403
           KTG VYNVT  ++GV++ K V  R + KR+N+R+EHVKHSKC QDFL  VK NE   KEA
Sbjct: 60  KTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEA 119

Query: 404 XAAGKTVNLKRQPAPPKAAHIVS-GTXKPVLLAPIPYE 514
            A GKTV L+RQPAPP  AH VS    +PV L P+ Y+
Sbjct: 120 KAQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score =  173 bits (421), Expect = 1e-44
 Identities = 88/158 (55%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
 Frame = +2

Query: 44  MTNSKGYXPRHQGTCSLAGSAHMELFRSPRYMKVYKVGDIVXIRGNGAVQKGMPHKVYHG 223
           M +S G   R + T       H ++ R   Y+K YKVGDIV I+ NGAVQKGMPHK YHG
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQI-RLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHG 59

Query: 224 KTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCXQDFLKXVKXNERLLKEA 403
           KTG VYNVT  ++GV++ K V  R + KR+N+R+EHVKHSKC QDFL  VK NE   KEA
Sbjct: 60  KTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEA 119

Query: 404 XAAGKTVNLKRQPAPPKAAHIVS-GTXKPVLLAPIPYE 514
            A GKTV L+RQPAPP  AH VS    +PV L P+ Y+
Sbjct: 120 KAQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 313 DALRYNPSANTLVDNHTES 257
           D  R N S N ++DNHT++
Sbjct: 29  DPARKNESTNDVIDNHTDT 47


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +1

Query: 136 HESVQSWRHCXHQRQWCSSKGYATQSIPW 222
           H    SW      R+ C +KGY     PW
Sbjct: 205 HNVNPSWTWEQTVRELCDAKGYYVMKDPW 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,097
Number of Sequences: 5004
Number of extensions: 38819
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)