Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_N18
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   120   7e-29
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   118   4e-28
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.39 
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    27   0.91 
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   3.7  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   4.8  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        24   8.5  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  120 bits (290), Expect = 7e-29
 Identities = 58/100 (58%), Positives = 75/100 (75%), Gaps = 3/100 (3%)
 Frame = +1

Query: 34  LKLCVCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSC 213
           +K   C NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  + +PKLY KL YCVSC
Sbjct: 18  VKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSC 77

Query: 214 AIHSKVVRNRSXKDRRIRT-PPKSNFPRDMSR--PQAVQR 324
           AIHS+VVR RS + RRIRT PP+  + RD  +  P AV +
Sbjct: 78  AIHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117



 Score = 29.5 bits (63), Expect = 0.23
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +3

Query: 6  GRAKHGRGHVKAVR 47
          GR KHGRGHVK VR
Sbjct: 9  GRNKHGRGHVKFVR 22


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  118 bits (284), Expect = 4e-28
 Identities = 56/99 (56%), Positives = 74/99 (74%), Gaps = 3/99 (3%)
 Frame = +1

Query: 37  KLCVCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCA 216
           K   C NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  + +PK+Y KL YCVSCA
Sbjct: 19  KFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCA 78

Query: 217 IHSKVVRNRSXKDRRIRT-PPKSNFPRDMSR--PQAVQR 324
           IH++VVR RS + RRIRT PP+  + RD  R  P A+ +
Sbjct: 79  IHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117



 Score = 27.9 bits (59), Expect = 0.69
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +3

Query: 6  GRAKHGRGHVKAVR 47
          GR KHGRGH K VR
Sbjct: 9  GRNKHGRGHTKFVR 22


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.39
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 64  RCVPKDKAIKKFVIRNIVEAAAVRDI 141
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 27.5 bits (58), Expect = 0.91
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = +1

Query: 103 IRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSXKDRRIRTPP 276
           + N ++ +   D N+  +Y   +L K+Y  +    SC +H+ ++ N   + R+    P
Sbjct: 34  LSNSLDLSKTPDYNNVQLYGFIRL-KIYKYVVLVTSCDLHAAILGNNIYRARKFAIFP 90


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 230 LSGTDRXKTEESVLLPRVTSLGT 298
           ++  DR +TE SVL  RVT +G+
Sbjct: 1   MAAVDRSRTEISVLSDRVTDVGS 23


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 202 CVSCAIHSKVVRNRSXKDRRIRTPPKS 282
           C SC+   K   N+  + RR++  PKS
Sbjct: 142 CGSCSDSKKPQSNKKHRGRRVKHSPKS 168


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 113 MFLITNFLIALSFGTHRAQFVQTHSFN 33
           +F + +F   L++   ++QF+Q HS +
Sbjct: 6   LFHVLSFCCTLAYAVPKSQFLQLHSLS 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,300,488
Number of Sequences: 5004
Number of extensions: 21258
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)