Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_N18
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   115   1e-26
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731...    27   6.2  
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879...    27   8.2  
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486...    27   8.2  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  115 bits (277), Expect = 1e-26
 Identities = 52/93 (55%), Positives = 71/93 (76%)
 Frame = +1

Query: 34  LKLCVCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSC 213
           +K   C+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+  + LPKLYAK+H+CVSC
Sbjct: 18  VKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSC 77

Query: 214 AIHSKVVRNRSXKDRRIRTPPKSNFPRDMSRPQ 312
           AIH+ +VR RS ++RR R PP+  F R +  P+
Sbjct: 78  AIHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109



 Score = 31.5 bits (68), Expect = 0.29
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +3

Query: 3  GGRAKHGRGHVKAVR 47
          GGR KHGRGHVK +R
Sbjct: 8  GGRNKHGRGHVKYIR 22


>07_03_0011 +
           12370624-12370684,12372573-12372718,12372793-12373129,
           12374323-12374452,12375346-12375406,12375572-12375618,
           12376873-12376950,12377195-12377345,12377495-12377558,
           12377735-12377893,12378007-12378128,12378952-12378981,
           12379050-12379124,12379563-12379644,12379809-12379938,
           12381417-12382164,12382833-12383054,12383127-12383276,
           12384851-12384904,12384985-12385058,12386130-12386204,
           12386365-12386584
          Length = 1071

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 33  VKAVRLHKLRAVRAKGQGYQKVRD*EHRRSGGGQR 137
           VK  +  K ++ R K +G +K R  EH R  GG+R
Sbjct: 98  VKKRKREKTQSDRDKDKGKEKERMEEHERRPGGER 132


>09_06_0293 +
           22086359-22086496,22086604-22087213,22087407-22087938,
           22088617-22089151
          Length = 604

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 162 WVYRGIVNISDRRRFYDVPNHELFDSLVLWHAPRAVCADAQL*RD 28
           WV+RG+  I   RR   V    +   LV W +  A   D+Q+  D
Sbjct: 559 WVWRGLRRIKTGRRGKPVQGSHMSAKLVWWWSIGASGVDSQVVSD 603


>05_01_0554 +
           4856131-4856605,4858051-4858098,4860611-4860792,
           4861409-4863136
          Length = 810

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 132 DRRRFYDVPNHELFD 88
           DR  FYD PN+E FD
Sbjct: 354 DRTLFYDEPNYEAFD 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,358,130
Number of Sequences: 37544
Number of extensions: 170152
Number of successful extensions: 429
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)