Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_N18
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   133   6e-32
Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical pr...    27   7.3  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  133 bits (321), Expect = 6e-32
 Identities = 59/76 (77%), Positives = 64/76 (84%)
 Frame = +1

Query: 49  CTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSK 228
           CTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y  + LPKLY KLHYC++CAIHSK
Sbjct: 23  CTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIACAIHSK 82

Query: 229 VVRNRSXKDRRIRTPP 276
           VVRNRS + RR R PP
Sbjct: 83  VVRNRSREARRDRNPP 98


>Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical
           protein B0001.5 protein.
          Length = 553

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 198 LLRVMRHPQQSCQEQIEXRQKNPYSSQE*LP*GHVTSTGSAK 323
           ++ V + P +S   ++   QKN Y+S E    GH TS+ +A+
Sbjct: 374 VINVYKEPSRSHANELYDSQKNQYTSHE----GHSTSSPTAE 411


>Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical
           protein D1086.2 protein.
          Length = 181

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +1

Query: 109 NIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSXK 252
           N++    +RD N   +   ++L  +   L YC+   +++  V NR  K
Sbjct: 82  NVITCKKLRDKNRNVIKQCYELDLVGTPLSYCIQRKLNADKVANRCVK 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,417,348
Number of Sequences: 27780
Number of extensions: 128352
Number of successful extensions: 310
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)