Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_N18
         (422 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   5.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   5.7  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   5.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   10.0 

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 174 P*VIR*APLLRVMRHPQQSCQEQIEXRQK 260
           P V++   LL  + HP +  Q ++  R+K
Sbjct: 3   PGVLKLLVLLTFLLHPSRCTQGKVNYREK 31


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 174 P*VIR*APLLRVMRHPQQSCQEQIEXRQK 260
           P V++   LL  + HP +  Q ++  R+K
Sbjct: 3   PGVLKLLVLLTFLLHPSRCTQGKVNYREK 31


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = -2

Query: 82  CPLARTARSLCRRTALT*PRPCLARP 5
           CP A+      R+     P  C+ RP
Sbjct: 92  CPRAKPGEKKFRKVITKAPLECMCRP 117


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +1

Query: 199 YCVSCAIH 222
           YCV+C +H
Sbjct: 542 YCVACGLH 549


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,758
Number of Sequences: 438
Number of extensions: 1638
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)