Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_N17
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   4.0  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    26   5.2  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    26   5.2  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    26   5.2  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    25   9.1  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   9.1  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/49 (22%), Positives = 21/49 (42%)
 Frame = -3

Query: 296 PLLEEIVSRDCPGCSGSRLASSTAXKCXRNKLEMDTCTKSLDTARYNVL 150
           P+ ++++   CP  SG  +   T      N +    C K+    RY ++
Sbjct: 283 PIFKQVLREGCPDASGLEVLDLTICPTNGNLVSFLVCWKNSINYRYMII 331


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 464 HGSVSSDAKSCSGAGTETLXAGGRSMD 544
           +G V+++ ++CS  G   L AGG ++D
Sbjct: 99  NGVVATEEETCSQIGVGILKAGGNAVD 125


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -3

Query: 287 EEIVSRDCPGCSGSRLASSTAXKCXRNK----LEMDTCTK 180
           E+++  D  GC G   A + +    RN+    L MD CT+
Sbjct: 197 EDLIELDISGCEGFHNADTLSRLVSRNRGLKELSMDGCTE 236


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 193 SISNLFLXHFXAVEDASREPEHPGQSRLTISSRRG 297
           S+  LFL H  A  +    P H  Q R  +S +RG
Sbjct: 209 SLDPLFLTHLKAYPNTVPVPRHWNQKRDYLSGQRG 243


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 467 GSVSSDAKSCSGAGTETLXAGGRSMD 544
           G+V+S+   CS  G   L  GG ++D
Sbjct: 82  GAVASEVPVCSDIGVSMLADGGNAVD 107


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 13  LRRRPHAQLLSLALRYLQTFY 75
           L + P + LLS  +++L+TFY
Sbjct: 251 LTKSPESSLLSAFIKFLETFY 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,796,887
Number of Sequences: 5004
Number of extensions: 23846
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)