Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_N14
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   226   2e-60
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   226   2e-60
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    43   4e-05
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   5.9  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   5.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   5.9  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  226 bits (553), Expect = 2e-60
 Identities = 104/141 (73%), Positives = 119/141 (84%)
 Frame = +3

Query: 66  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAK 245
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GV AK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 246 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLXAGFGRKGHAVGDIPGVRF 425
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ NDE L +GFGRKG A GDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120

Query: 426 KVVKVANVSLLALYKEKKERP 488
           KVVKVA V L AL+ EKKE+P
Sbjct: 121 KVVKVAGVGLSALFHEKKEKP 141


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  226 bits (553), Expect = 2e-60
 Identities = 104/141 (73%), Positives = 119/141 (84%)
 Frame = +3

Query: 66  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAK 245
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GV AK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 246 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLXAGFGRKGHAVGDIPGVRF 425
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ NDE L +GFGRKG A GDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120

Query: 426 KVVKVANVSLLALYKEKKERP 488
           KVVKVA V L AL+ EKKE+P
Sbjct: 121 KVVKVAGVGLSALFHEKKEKP 141


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 29/82 (35%), Positives = 45/82 (54%)
 Frame = +3

Query: 192 GASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLX 371
           G+   +G+      V  K+PNSA+RK  RV+L   G+ VTA++P  G  ++ + +   L 
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 372 AGFGRKGHAVGDIPGVRFKVVK 437
            G GR      D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 129 WADKEFKKAHMGTKWKANPFGGASHAKGIV 218
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -1

Query: 367 SXSSFXSMWFRQPS---RGTNAVTFFPFLMSCTRTHLRMA 257
           S S F S+WFRQ +       AVT+F   MS    HL  A
Sbjct: 156 SVSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEA 195


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 135 PPIAVHDGGSRAYAP 91
           PP AV  GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,945
Number of Sequences: 5004
Number of extensions: 47400
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)